Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01418 ATGGACCACAACAACAGGGTTCCAAGAATCCATGCATTTCTTccatcaacaccatcaccaccaccaccaccaccaccTTCTCCTCCCATTCTTTCCTTCATTGTAGCTCTCACCATAGCAACACTACTCTTCATGTGCTTCTACTATTTCTCAGCCATTATTTCCTTTGCCTTTCTCGTGGTCCTTTACATCATCACCCTCCTCGTTTGCAGATTTGTGAGCACAGATGATGGAGCCTCTCCAAAGAAGAACCAAAGGGTGGTGAGAATTTTCAATAGGGTTTTCTTGGTTGTTGAGGAAAAAAAGGGGAATCATAGGCCACAACAAGTTAAGAAGTTTCTTCTAGGATCTGTTGTTTGTTTTGGAAGCCAAACATTGGCATCATCACCATCATTATCATGTAGGGAATGTGCAATTTGTTTGGAGGATTTTAAGATGGGAGAAGAGTGCCTTGTTTTTTGTGTTTGTGGCCACATTTTTCATTGTGACTGTATCAACCATTGGCTTCGGGAAAAACCCAGTTGCCCAATTTGCCGTCACTATGTGTCATCATCATCAACCACCATGGTCAACAATAATTCTAGAAGCATTGAATTCTTGGATAATTTAGTTTAG 615 0.3821 MDHNNRVPRIHAFLPSTPSPPPPPPPSPPILSFIVALTIATLLFMCFYYFSAIISFAFLVVLYIITLLVCRFVSTDDGASPKKNQRVVRIFNRVFLVVEEKKGNHRPQQVKKFLLGSVVCFGSQTLASSPSLSCRECAICLEDFKMGEECLVFCVCGHIFHCDCINHWLREKPSCPICRHYVSSSSTTMVNNNSRSIEFLDNLV 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01418 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 196 IPR013083 -
Cca04g01418 204 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 79 185 - -
Cca04g01418 204 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 4 74 - -
Cca04g01418 204 SMART ring_2 137 178 IPR001841 -
Cca04g01418 204 Pfam Ring finger domain 136 179 IPR001841 -
Cca04g01418 204 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Cca04g01418 204 SUPERFAMILY RING/U-box 136 185 - -
Cca04g01418 204 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 4 74 - -
Cca04g01418 204 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 79 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01418 Cca-Chr4 18741553 18742265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01418 31 185 C3H Transcription Factor Family AT1G53010 31.765 9.14e-18 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01418 - - vra:111240582 206.453