Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01414 ATGAGTGTGGGAATACCTCACAGGCCACCCCCTTACAACTTGAATGCTATGTTAGCTTCTGCTCGCACACCGATTTCGCACTCTGGCCAGCAACTGCATCCAAGTTATTTCCAGGCACAGTCAAGACCATTTCATTATCAGCAGTACATCCCTCATGTCTATGGAAGCTATGGCACCAATGGATTACCTTATCTTGGAGGTGCTGCTATGACTAGTTTCTTTAATCCTATAATTGTTATGTTTGGTGAGATGGTCTTGACTAGGATTTTTGGGGTCTCAGATGCAAATATGTTTGCATACCCTCATAATAGAAGTGGCAGCCCTAGAATGAGAAGGCAGGAAATGCAGATTGACAAGTCTCTGAACAGACTTTCTATCTTCCTCCTATGTTGTATCATTTTGTGTCTTCTCTTATTTTGA 420 0.4238 MSVGIPHRPPPYNLNAMLASARTPISHSGQQLHPSYFQAQSRPFHYQQYIPHVYGSYGTNGLPYLGGAAMTSFFNPIIVMFGEMVLTRIFGVSDANMFAYPHNRSGSPRMRRQEMQIDKSLNRLSIFLLCCIILCLLLF 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01414 139 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 3 139 - -
Cca04g01414 139 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 139 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01414 Cca-Chr4 18686445 18686864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01414 1 134 C3H Transcription Factor Family AT4G27470 44.444 2.01e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01414 K10666 - gmx:100817526 199.519