Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01406 ATGGGGCCTCATGTGATTTCTTCAActtttctttcctatctttgctttgctttTGTTTTCAGTGTAGTCCACGTCCATGCTAGTAACGGTTGGCTTAATGCTCATGCAACGTTCTATGGGGCAAATCAAAGTCCCTCTACCCTTGGGGGAGCTTGTGGCTACGATGATACCTTTCATGCTGGGTTTGGTGTGAACACTGCAGCAGTGAGCACTATGCTTTTCAGAGATGGTGAGGTTTGTGGTGCTTGCTACCAATTAATGTGTGACTATAGGGCAGACCCAAAGTGGTGCCTTATTAGCCGCAGTGTGACAGTAACCGCCACTAATTTTTGCCCTCCAAACAACCATGGAGGGTGGTGTGACCCTCCTTACCATCACTTTGACATGTCTATGCCTGCTTTTCTTCGTATTGCACGACAAGGAAATGAAGGCATTGTTCCTGTCCTTTATAGAAGGGTGGCATGCAAAAGAAGAGGTGGAGTGAGGTTCACATTGAAGGGGCAATCCAATTTCAACATGGTGATGGTATCCAATGTGGGAGGGAGTGGGGATGTGAAGGGTGTGTGGATCAGAGGGTCCAGAAGTGGAGCATGGCTGCCAATGCACAGGAACTGGGGAGCCAACTGGCAGAGCAGTGCAGATCTCAGAAACCAGAGACTCTCATTCAAGATCACATTGGTTGATGGGAAGACACTGCTGTTCCTCAATGTGGTTCCCTCCACTTGGACCTTTGGACAAACTTTTTCATCCAAAACTCATAGTGCTATGAACATGTGTTCTGCTGCATCAGTAGAGTCAAATGCGTGCCAGGCCAGCCCGCCAAGACAAGTTCCCACTTGGCAACCTGCTTTTACGCGCGTCTTTGCTCTGTTCAGGTTCCGCAACCTCGCTTCCTTCCCATTTGAACGAACACTTGGTCTTCGTTTGGCAATGTCGTTAACGGCGTCTCGAAACCTCGCCGCAACGTTTCTGCGACGATTCTCCGCAGCCACAAGGGGCCCAAAAAACCTCTATTCCCGAATCAGCCCCCTCGGAGACCCTTCCGTGAGCGTTGTCCCCGTTCTCGACAGGTGGATCCAACAAGGTAACGCCGTTAACGGCCTCGAGCTTCAACGCATCGTCAAAATCCTCCGCACCAACAAGCGCCTCACCCAAGCACTCGAGGTTTCTGAGTGGATGAGTAGCAAAGGGCTATGCCCAATTTCCTCGGGTAACCAAGCGGTGCAGTTAGATCTCATTGGTAGAGTTCGTGGAGTGGAGAGTGCGGAGAGTTATTTCAACAGTTTGAGTGATAGAGACAAAACTTTCAAGGCTCACGGTGCCCTTTTGAATTGTTATGTGAGGGAAGGATTGGTTGAAATGTCACTCTCGCAGATGCAGAAGATGAAGGACATGGGTATGGTTTCCCTTCTCAATTACAACAACATAATGTGGCTCTACACGCACACCCAACAACTTGAGAAAGTCCCTGGTGTCTTGGCCCAGATGAAAACCGATGGTGTTTCTCCAAACATCTTCAGCTACAGGATTTGCATAAACTCTTATGGCATGCGAGGCGACCTCGCGAATGTGGAGAAACTGTTGGAGGAGATGGAGAGTGAACCCCACATTGGCACAGATTGGATGACATATTCTATGGTGGTGAAGTTCTACATAAAAGCAGGCATGAAGGAGAAGGCTCTGGTTTTCCTGAAGAAGTGTGAGGAAAAAGCAGACAAGCGCGACGTGCTTGCCTACAACCATCTGATATCACACTATGCAGGTCTTGGGGGCAAGGGGGGCATGATGAGAGTTTGGAGGCTCCAGAAAGCCAACTGCAAGAAGCAGCGTAACAGGGAGTATATAACCATGTTGGGTTGTTTGGTGAAGCTTGGGGAGCTTGATCAAGCTGAAAAAGTACTTGCCGAGTGGGAGTTATCTGGTAACACTTGTGATTTCAGAGTGCCTAACGTCCTCCTCATAGGGTATTCCCAGAAGGGAATGGTTGAGAAGGCAGAAGCAGTGCTGCGAAGTTTGGCCGCAAAAGGAAAGACACCGACTCCCAACAGTTGGGGCATCATTGCATCTGGGTATGTAGACAAGGAGAACATGGAGAAGGCATTTCAGTGCATCAAGGAAGCTCTGGCTGTGCTAGACCAGAACACACGTTGGAGACCAAAAGTTGATGTCGTGTCCAGCATTTTCAATTGGGTCACTAGTAACAGAGATGTAGGGGAAGTGGAAGATTTTGTTAATTCAATGAAGACTGTGAATTCAATGAATAGGGACATGTATCTGTCTTTGATCAAGATGTACGTTAGATGTGGGAAGGATTTAGATGGGATTTTAGAGAGTATGAAAGCTGATAATATAAACCTCGATGAAGAAGAAATTAAGGAAATCTTAGCTCACAATTAA 2397 0.4735 MGPHVISSTFLSYLCFAFVFSVVHVHASNGWLNAHATFYGANQSPSTLGGACGYDDTFHAGFGVNTAAVSTMLFRDGEVCGACYQLMCDYRADPKWCLISRSVTVTATNFCPPNNHGGWCDPPYHHFDMSMPAFLRIARQGNEGIVPVLYRRVACKRRGGVRFTLKGQSNFNMVMVSNVGGSGDVKGVWIRGSRSGAWLPMHRNWGANWQSSADLRNQRLSFKITLVDGKTLLFLNVVPSTWTFGQTFSSKTHSAMNMCSAASVESNACQASPPRQVPTWQPAFTRVFALFRFRNLASFPFERTLGLRLAMSLTASRNLAATFLRRFSAATRGPKNLYSRISPLGDPSVSVVPVLDRWIQQGNAVNGLELQRIVKILRTNKRLTQALEVSEWMSSKGLCPISSGNQAVQLDLIGRVRGVESAESYFNSLSDRDKTFKAHGALLNCYVREGLVEMSLSQMQKMKDMGMVSLLNYNNIMWLYTHTQQLEKVPGVLAQMKTDGVSPNIFSYRICINSYGMRGDLANVEKLLEEMESEPHIGTDWMTYSMVVKFYIKAGMKEKALVFLKKCEEKADKRDVLAYNHLISHYAGLGGKGGMMRVWRLQKANCKKQRNREYITMLGCLVKLGELDQAEKVLAEWELSGNTCDFRVPNVLLIGYSQKGMVEKAEAVLRSLAAKGKTPTPNSWGIIASGYVDKENMEKAFQCIKEALAVLDQNTRWRPKVDVVSSIFNWVTSNRDVGEVEDFVNSMKTVNSMNRDMYLSLIKMYVRCGKDLDGILESMKADNINLDEEEIKEILAHN 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01406 798 Pfam PPR repeat 614 641 IPR002885 -
Cca04g01406 798 Pfam PPR repeat 650 673 IPR002885 -
Cca04g01406 798 Pfam Lytic transglycolase 66 150 IPR009009 -
Cca04g01406 798 SUPERFAMILY Barwin-like endoglucanases 30 178 IPR036908 -
Cca04g01406 798 PANTHER OS12G0527900 PROTEIN 326 796 - -
Cca04g01406 798 SUPERFAMILY HCP-like 517 709 - -
Cca04g01406 798 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 160 IPR007112 -
Cca04g01406 798 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 250 IPR007117 -
Cca04g01406 798 Gene3D Tetratricopeptide repeat domain 366 542 IPR011990 GO:0005515
Cca04g01406 798 Gene3D - 160 254 IPR036749 -
Cca04g01406 798 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Cca04g01406 798 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Cca04g01406 798 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Cca04g01406 798 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Cca04g01406 798 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Cca04g01406 798 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Cca04g01406 798 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Cca04g01406 798 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Cca04g01406 798 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 326 796 - -
Cca04g01406 798 SMART dpbb_1 66 150 IPR007112 -
Cca04g01406 798 SUPERFAMILY PHL pollen allergen 157 250 IPR036749 -
Cca04g01406 798 Pfam Expansin C-terminal domain 161 239 IPR007117 -
Cca04g01406 798 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 645 679 IPR002885 -
Cca04g01406 798 Pfam Pentatricopeptide repeat domain 461 517 IPR002885 -
Cca04g01406 798 Gene3D Tetratricopeptide repeat domain 573 734 IPR011990 GO:0005515
Cca04g01406 798 Coils Coil 694 714 - -
Cca04g01406 798 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Cca04g01406 798 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Cca04g01406 798 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Cca04g01406 798 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Cca04g01406 798 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Cca04g01406 798 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Cca04g01406 798 Gene3D - 20 156 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01406 Cca-Chr4 18526636 18533571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01406 28 251 Expansin Gene Family AT3G15370 63.386 1.97e-112 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01406 - - gmx:100804385 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01406 04 18526636 18533571 Cca04g01406 04 18526636 18533571 ECH