Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01395 ATGTTGAAGCACTCAAGCACACAGAGACTCTATCTCATTGAGGAGGTGGAAGAATTAGAGTCTCAAACTAATCACAAAGCAACACTGCAGGAGGAAGCACCTGAAATCTTTCACAAGACAAATCCTCCAGTGACTCTCAAGTTCCATGATGTTATCTATAAAATTAAGATCACAAAGTGGGGATTGCTTAAGAACACAAAGGCAGAAGAGAAAGTAATACTGAATGGGGTGACAGGCATGGTTCAACCTGGTGAAGTCCTAGCCATGTTAGGTCCATCTGGAAGTGGCAAAACAACTTTGCTATCAGCTTTGGGAGGAAGGCTTGGAGGGAAACTCTATGGAACCATAACTTACAATGGCAAAGCCTTCTCAAATGCAATGAAAAGGAGCACTGGTTTTGTCACACAAGATGATGTTCTCTATCCCCACTTAACTGTGACAGAAACTCTAGTGTTCACTGCCCTTCTCAGACTGCCAAATAGTTTCACCAAAAAGGAGAAAATTGTGCATGCAAATTCTGTGATAGCTCAACTTGGTTTAACCAGGTGCAAGGATAGCATCATTGGAGGGCCACTACTAAGAGGGGTTTCAGGAGGGGAGAGGAAAAGGGTTAGCATTGGACAAGAAATGCTCATAAACCCAAGCTTGTTGTTCCTTGATGAACCAACCTCTGGCTTGGACTCAACAACAGCTAAAAGGATTGTGTCAACTTTGTGGGAGCTAGCAAATGGAGGGAGAACCATTGTGATGACCATACATCAACCTTCTAGTAGGGTGTACTACATGTTTCACAGGGTGTTGCTGCTTTCAGAAGGGAACCTATTGTATTTTGGAAAAGGGTCTGAAGCTATGGAATATTTTACTAATATTGGATTTGTCCCTACCATGGCCATGAACCCCTCAGACTTCCTTTTGGATCTAGCAAATGGTGTCTACACTGATCAATCGAATGAGGACCATGCCTTAAACAAGCATAAGTTGATTTATGCATATAGGACCTACTTCGATGCCAAATTGAAACCGGTACTTCATGAAATTACTGACTATGATAAGAGTGAGGGTAGATTTGAAGACAATGACTTTGGTGAATGGCCTACCAGTTGGTTGCAGCAATTTCTTGTGCTGCTAAAACGACATGTCAAAGAGAGAAAGTATGAATCATTCTCTGGATCAGATTGGGCTTCTATTCTTCCTTACTGGCTTCTGGTGTGGCATGCCTCTCTACCAAGCAATATTCACCTTCCCACCAGAGCTAATGATGCTGCAGAAGGAACGATCCTCTGGAATGTACAGGCTCTCTTCATATTTCATGTCAAGGATGGGTTGAAGCACAATGTCACCAACTTCTTATACACACTCTTCAGTGTTCTACTCAATGTGTTAACTTCACAAGGGCTAGGCCTTGCAATTGGTGCTATTGTAATGGACCAGAAATCCGCAACCACACTGGCCTCGGTGATTGTGCTAACTTCTGTTCTGGTTGGTGGATACTATGTTCAACATGTGCCAAAGTTTATGGCATGGCTGAAATACTTTTCCATCAACTACTACATATACCATCTCTTGATGGGGTCTCAGTATGAGTCTAGTGGCACATACCCATGTTCTAGTGGTAAGTGTTTAATAGCAGAATATCCTATGATTAAGCAAATGGGGCTGCATTTACAAGGGCAACTCACTGCTGCATTGGCTCTGTTCATAATGCTAATAGGCTACAGACTTGTGGCTTATTGTGCTCTTATGAGGATTGGGGTGACAAAGAAATTGGAGTAG 1773 0.4258 MLKHSSTQRLYLIEEVEELESQTNHKATLQEEAPEIFHKTNPPVTLKFHDVIYKIKITKWGLLKNTKAEEKVILNGVTGMVQPGEVLAMLGPSGSGKTTLLSALGGRLGGKLYGTITYNGKAFSNAMKRSTGFVTQDDVLYPHLTVTETLVFTALLRLPNSFTKKEKIVHANSVIAQLGLTRCKDSIIGGPLLRGVSGGERKRVSIGQEMLINPSLLFLDEPTSGLDSTTAKRIVSTLWELANGGRTIVMTIHQPSSRVYYMFHRVLLLSEGNLLYFGKGSEAMEYFTNIGFVPTMAMNPSDFLLDLANGVYTDQSNEDHALNKHKLIYAYRTYFDAKLKPVLHEITDYDKSEGRFEDNDFGEWPTSWLQQFLVLLKRHVKERKYESFSGSDWASILPYWLLVWHASLPSNIHLPTRANDAAEGTILWNVQALFIFHVKDGLKHNVTNFLYTLFSVLLNVLTSQGLGLAIGAIVMDQKSATTLASVIVLTSVLVGGYYVQHVPKFMAWLKYFSINYYIYHLLMGSQYESSGTYPCSSGKCLIAEYPMIKQMGLHLQGQLTAALALFIMLIGYRLVAYCALMRIGVTKKLE 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01395 590 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 29 395 - -
Cca04g01395 590 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 435 584 - -
Cca04g01395 590 Gene3D - 63 290 IPR027417 -
Cca04g01395 590 Pfam ABC-2 type transporter 433 527 IPR013525 GO:0016020|GO:0140359
Cca04g01395 590 Pfam ABC transporter 74 224 IPR003439 GO:0005524
Cca04g01395 590 SMART AAA_5 83 273 IPR003593 -
Cca04g01395 590 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 46 296 IPR003439 GO:0005524
Cca04g01395 590 Pfam ABC-2 type transporter 253 326 IPR043926 GO:0140359
Cca04g01395 590 Coils Coil 12 32 - -
Cca04g01395 590 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 435 584 - -
Cca04g01395 590 ProSitePatterns ABC transporters family signature. 196 210 IPR017871 GO:0005524
Cca04g01395 590 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 29 395 - -
Cca04g01395 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 291 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01395 Cca-Chr4 18347634 18354250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01395 73 257 Calmodulin-binding Proteins AT2G36910 30.052 1.01e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01395 K05681 - gmx:100812397 861.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01395 04 18347634 18354250 Cca04g01395 04 18347634 18354250 ECH