Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01394 ATGAGAGTTCCAGAGAGAGACCCTCTTGCACAATTGAGTTTACCACCTGGGTTTAGGTTTTACCCTACAGATGAAGAGCTTCTTGTTCAGTACCTTTGTCGCAAGGTTGCTGGTCACCATTTTTCTTTGCCAATCATTGCTGAAGTTGATTTGTATAAGTTTGATCCATGGGTTCTTCCAGGTAAGGCTGTGTTTGGAGAGAAGGAGTGGTACTTTTTCAGCCCTAGAGACAGGAAGTACCCTAACGGTTCAAGACCAAACAGGGTTGCAGGTTCTGGGTATTGGAAAGCCACAGGCACAGACAAAGTCATCACCACTGAAGGTAGAAAAATTGGCATAAAAAAAGCACTTGTTTTCTACATTGGCAAAGCTCCCAAAGGCTCCAAAACCAATTGGATCATGCATGAATATCGCCTTCTCGACTCTTCAAGAAAAAACAATCTCGGAACCACAAAGCTTGATGATTGGGTTTTGTGTCGTATCTATAAGAAGAACTCGAGTGCACAAAATGTTGGGGCAAGTTTAGGGGCTAAAGAATGCAGCAATGGGTCGTCGTCACCTTCTTCATCGTCCCACGTGGACGACATCCTCGAATCATTTCCCGAAATTGATGATCAATGCTTCACGTTGCCACGTGTGAACTCACTTAGAACAATGCAACAAGATGAGAAATTCGGGTTTCAGAACATGGGAACAGAGTTTTTCGCGGATTGGGTTAACCAAACAGAGCAGGATTCGGTTTCCGGATTCGGGTCGGGTATGATGAACTATAATTGTAATGACTTATTTGTCCCTTCCATGCCATCATTGTTCAGCCACGTGGATTTCATGACGGGAGCACCGACTGAGGAGGAGGTCCAAAGTGGCATGAGAACCCAACGGGCCGACGGGCCCAAATGCTTTCAGTCCAACCCGAAGGCCCAACTCCTATCGGGCCAACTAGACCCGTTTGAGTTCGGGTACATGGGTCAGCAATTCGGGTTACGAGGGTAG 993 0.4632 MRVPERDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEVDLYKFDPWVLPGKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITTEGRKIGIKKALVFYIGKAPKGSKTNWIMHEYRLLDSSRKNNLGTTKLDDWVLCRIYKKNSSAQNVGASLGAKECSNGSSSPSSSSHVDDILESFPEIDDQCFTLPRVNSLRTMQQDEKFGFQNMGTEFFADWVNQTEQDSVSGFGSGMMNYNCNDLFVPSMPSLFSHVDFMTGAPTEEEVQSGMRTQRADGPKCFQSNPKAQLLSGQLDPFEFGYMGQQFGLRG 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01394 330 Gene3D NAC domain 23 169 IPR036093 GO:0003677|GO:0006355
Cca04g01394 330 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Cca04g01394 330 PANTHER NAC TRANSCRIPTION FACTOR 56 1 310 - -
Cca04g01394 330 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Cca04g01394 330 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 310 - -
Cca04g01394 330 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01394 Cca-Chr4 18329101 18336186 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01394 1 325 NAC Transcription Factor Family AT3G15500 57.567 3.02e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca04g01394 NAM 1.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01394 - - gmx:100811301 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01394 04 18329101 18336186 Cca04g01394 04 18329101 18336186 ECH