Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01392 ATGGAGACCACTGATGACTCATCCACCACTTCACAACAACAACCGAACCTGCCACCTGGGTTTCGGTTCCACCCCACAGACGAAGAGCTTGTGGTTCATTACCTCAAGAAGAAAGTTGATTCTATTCCTCTCCCTGTTTCAATCATCGCTGATGTTGATCTCTACAAGTTTGATCCATGGGAATTACCAGGTAAGGCATCGTTTGGGGAGGAGGAGTGGTACTTCTTCAGCCCGAGAGACAGGAAGTACCCGAATGGTGCGAGGCCAAACAGGGCTGCAACTTCAGGGTATTGGAAAGCTACTGGGACAGATAAGCCTGTGTGCAGTGGAACTCACAAGGTTGGAGTGAAGAAATCTTTGGTTTTCTATGGAGGGAAGCCACCAAAAGGGGTCAAAACTGATTGGATCATGCATGAGTATCGTCTTGCTGATACCAAGCCTAACAATAAGCCTCCGGGGTGTGACTTGGGCCACAAGAAAAACTCCCTAAGGCTGGATGATTGGGTGTTGTGCCGGATCTACAAGAAGGGTAACACACAAAGGTCACCTATGGACCATGACAAGGATGATTCCATGGATGACATGATTGCAGAAGTACCCTCTTCCATCAACGTGGGCCACATGAATGCGAGGTTTCACCTTTCCACGAGCTACAGTGGTGCATTGTTGGAAAATGACAGAAACACGTTAGAAGGTGTGGTTATAGGCAATGGTGTGAATGTGAATGGGATCAGCACTACAACAAGTGCCATATCATCTCAGTATGGCACCACCTCAAACTCCAAGCCAGACCTTCCTTTTGCAACTTCAAACAATAACACTTTAGCCTCCAAAAGAACACTCTCATCACTCTATTGGAATGATCATGATCATCATGAGGATGTTGTGAATGCCACATCGTGTGATCACAAACACTTCAATTTAGACAGTAATGGGAATGTGACTGTTTTGAGGACTGAAGAGAATACTGACAACAATGGCTCCTTTGCTACTCTGCTTAACCACTTCCCTCAAGCACCTTATCAAATACAAGGGACCAATTGGTATGGTTAA 1053 0.4587 METTDDSSTTSQQQPNLPPGFRFHPTDEELVVHYLKKKVDSIPLPVSIIADVDLYKFDPWELPGKASFGEEEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVCSGTHKVGVKKSLVFYGGKPPKGVKTDWIMHEYRLADTKPNNKPPGCDLGHKKNSLRLDDWVLCRIYKKGNTQRSPMDHDKDDSMDDMIAEVPSSINVGHMNARFHLSTSYSGALLENDRNTLEGVVIGNGVNVNGISTTTSAISSQYGTTSNSKPDLPFATSNNNTLASKRTLSSLYWNDHDHHEDVVNATSCDHKHFNLDSNGNVTVLRTEENTDNNGSFATLLNHFPQAPYQIQGTNWYG 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01392 350 MobiDBLite consensus disorder prediction 1 19 - -
Cca04g01392 350 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 339 - -
Cca04g01392 350 ProSiteProfiles NAC domain profile. 17 176 IPR003441 GO:0003677|GO:0006355
Cca04g01392 350 MobiDBLite consensus disorder prediction 1 22 - -
Cca04g01392 350 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
Cca04g01392 350 PANTHER NAC TRANSCRIPTION FACTOR 56 1 339 - -
Cca04g01392 350 SUPERFAMILY NAC domain 5 176 IPR036093 GO:0003677|GO:0006355
Cca04g01392 350 Gene3D NAC domain 26 180 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01392 Cca-Chr4 18250152 18252199 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01392 1 349 NAC Transcription Factor Family AT3G15510 51.630 9.41e-109 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca04g01392 NAM 5.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01392 - - gmx:100812933 554.673