Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01386 ATGGTGAAAATGGAACTCATTAAGTGGGTTCCTTGTGTTGTGGTAGTTGTTTTTCTGGTTTTGGTTAATGGGTCGTTTGCCTTGTACACTCCTCCTGATAGTTATCTAATTGCTTGTGGTTCTTCTCAAAACATCACCTTCCAAGGTCGCACTTTTGTTCCTGATTCACAGCATTCCTCACTTGTGTTGAAAACTGGGAATTCTGTTGTTGCTAGTTCCAATTCCAGTAGTGCCCCTTTTCCAATTTACCAATCTGCTAGGGTTTTCACAGAGAGAGCTTCTTATAGGTTTGAGATTAAGCAAGAAGGTAGGCACTGGGTTAGGCTATACTTTTCACCTATTCCAAACTCTAACCATAACTTGACTTCAGCTTCTTTAACTGTGGTTACTGAAGATTTTGTACTCTTGAGTAACTTTACTTTTAAGAGATACAATGGTTCTTATATGTTTAAGGAGTATGCAATCAATGTTACCTCTGATTCATTGACTGTTATCTTCATCCCATCGAATGGTTCGGTAGCCTTTGTCAATGCAATTGAAGTTGTGTCAATGCCAAATGAGTTGTTTGTTGATCAGGCACTGGCTGTTAACCCACCAGCACCATTTAGTGGGCTTTCTGAACTTGCTTTTGAAACTGTTTATCGGTTAAACATGGGGGGTCCTTTGATTACTGCTCAAAATGACACCTTGGGTAGGACTTGGGTGAATGATAGGAAGTATCTTCATGTGAACAGCTCTGTCCTTAATGTGTCCGTGAATCCATCGACCATTAAGTATCCGGTTGCTGTTACGCCTGAAACGGCTCCAAATTGGGTCTATGCCACTGCTGAAGCAATGGGGGATGCTAATGTGAATGATCCAAATTTCAACATCACTTGGGTCTTCAATGTGGATCCAAATTTCTCCTATTTCATCCGGGCTCACTTTTGTGATATCATGAGCAAGTCACTCAACACTTTGGTGTTCAATTTGTTCCTAAATTCTGACATAGCTCTTCAAAGCCTTGACCTCTCATCAATAACTAACGACTTGGCTGTGCCTTACTTCAAGGATTTCGTTGCCAATGCCTCGGAAGACTCTAACACTTTGTCTGTGAGTGTTGGTCCAGATACTGTGGCAGACCTCCCAAATGCCACTATGAATGGGTTGGAGATAATGAAGATTAGCAACTCATTGAAGAGCTTGGATGGGCTTTATTCAGTTGATACTCTTCTTCCAAGTTCACATTCTAAGAAAAGTAAGGTAGGAGTTATAGTTGGTTCCGCCGTTGGGGCTCTAGCTGCCGTAGCAGTGGTTGGTTTGTGTTATTGCTGCTTGGTGAAACGCAAGTCAAAGTCTACTCAACCAAGCCACTCATGGCTGCCTTTACCACTATATGGAAACTCTCTTACCATGACAAAGAATTCAACAATTTCACAGAAGAGTGGAACTGCAAGCTGCATTTCTTTGGCTTCGACAAATCTTGGTCGATTCTTCAGTTTCCAAGAAATCCTAGACgcaaccaacaaattcgatgagaagctacttcttggtgttggtggttttggaagggtttacaagggaacacttgaagatgggaccaatgtagctgttaaaaggggcaacccaagatctgagcagggccttgctgaatttcggaccgaaattgaaatgctgtccaagcttcgccaccgtcacctggtgtctctcattggctattgtgatgagaggtcagagatgattcttgtctatgaatacatggctaatggacctctcaggagtcatttgtatggaacggacttgccacctctgtcatggaagcagaggcttgagatttgcattggagcagcaagaggccttcattatctccacaccggcgcagctcagagcataattcaccgcgatgtgaagacaacgaatatcctcttagatgagaactttgttgccaaagttgctgatttcggcctctccaagactggtccagctcttgatcagacccatgtgagcactgctgtgaagggtagctttggttatcttgatcctgagtacttcagaaggcaacaacttactgagaaatcagatgtgtattcatttggagtggtgttaatggaagtgttatgcacaaggccagccttgaaccctgttcttcccagggagcaagttaacatagctgaatgggccatgacctggcagaagaaaggcatgcttgaccaaatcatggatcaaaatcttgttggcaaggtgaatcctgcttctctcaagaagtttggcgagaccgccgagaagtgcttggccgagcacggtgtggaccggccgtctatggGGGATGTTTTGTGGAACCTTGAGTATGCATTGCAGCTTCAAGAGACCTCATCAGCCCTCATGGAGCCTGAAGATAACAGCACAAACCACATCACTGGAATTCAGTTGACACCCCTTGACCATTTTGACAACAGTGTGAGTATGATTGATGGGGGAAACTCTTGCACTGATGATGATGCAGAAGATGCTGCCACAAGTGCAGTGTTCTCACAATTGGTAAATCCTCGCGGAAGATAA 2538 0.2884 MVKMELIKWVPCVVVVVFLVLVNGSFALYTPPDSYLIACGSSQNITFQGRTFVPDSQHSSLVLKTGNSVVASSNSSSAPFPIYQSARVFTERASYRFEIKQEGRHWVRLYFSPIPNSNHNLTSASLTVVTEDFVLLSNFTFKRYNGSYMFKEYAINVTSDSLTVIFIPSNGSVAFVNAIEVVSMPNELFVDQALAVNPPAPFSGLSELAFETVYRLNMGGPLITAQNDTLGRTWVNDRKYLHVNSSVLNVSVNPSTIKYPVAVTPETAPNWVYATAEAMGDANVNDPNFNITWVFNVDPNFSYFIRAHFCDIMSKSLNTLVFNLFLNSDIALQSLDLSSITNDLAVPYFKDFVANASEDSNTLSVSVGPDTVADLPNATMNGLEIMKISNSLKSLDGLYSVDTLLPSSHSKKSKVGVIVGSAVGALAAVAVVGLCYCCLVKRKSKSTQPSHSWLPLPLYGNSLTMTKNSTISQKSGTASCISLASTNLGRFFSFQEILDATNKFDEKLLLGVGGFGRVYKGTLEDGTNVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLSWKQRLEICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPALDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDQIMDQNLVGKVNPASLKKFGETAEKCLAEHGVDRPSMGDVLWNLEYALQLQETSSALMEPEDNSTNHITGIQLTPLDHFDNSVSMIDGGNSCTDDDAEDAATSAVFSQLVNPRGR 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01386 845 Gene3D Phosphorylase Kinase; domain 1 463 579 - -
Cca04g01386 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Cca04g01386 845 PANTHER OS07G0166700 PROTEIN 21 838 IPR045272 GO:0004714|GO:0006468
Cca04g01386 845 ProSitePatterns Protein kinases ATP-binding region signature. 510 532 IPR017441 GO:0005524
Cca04g01386 845 CDD STKc_IRAK 510 775 - -
Cca04g01386 845 Gene3D - 34 185 - -
Cca04g01386 845 Gene3D - 208 390 - -
Cca04g01386 845 SUPERFAMILY Protein kinase-like (PK-like) 483 775 IPR011009 -
Cca04g01386 845 Pfam Malectin-like domain 37 388 IPR024788 -
Cca04g01386 845 Gene3D Transferase(Phosphotransferase) domain 1 580 799 - -
Cca04g01386 845 ProSiteProfiles Protein kinase domain profile. 504 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01386 845 PANTHER RECEPTOR-LIKE PROTEIN KINASE THESEUS 1 21 838 - -
Cca04g01386 845 Pfam Protein tyrosine and serine/threonine kinase 509 771 IPR001245 GO:0004672|GO:0006468
Cca04g01386 845 SMART serkin_6 504 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01386 Cca-Chr4 18075541 18079130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01386 15 845 Receptor kinase-like Gene Family AT3G46290 53.627 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Cca04g01386 Malectin_like 1.4e-40 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01386 - - gmx:100809700 1513.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01386 04 18075541 18079130 Cca04g01386 04 18075541 18079130 ECH