Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01373 ATGAACGAGAAGGCCAACGTTTCCAAAGAGCTCAACGCTAAACACAAAAAGATACTGGAAGGACTTCTTAGGCTACCAGAGAATAAGGAATGTGCTGACTGCAAAGCTAAAGGCCCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATATGCATGCAGTGTTCAGGAATACACAGAAGTCTTGGGGTACACATATCAAAGGTTCGCTCTGCAACTTTGGACACCTGGCTCCCAGAGCAGGTCGCATTCATTCAATCGATGGGAAATGAGAAGGCAAATAGTTACTGGGAAGCAGAATTACCCCCACATTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTATGAAGATAAGAGATGGGTTGCAAAGGATGAGAAACCGAAATCACCTTCTAGTTTCCGAGAAGAGAAAACTCCTTCACATTTGCAAAAGCCAGTGGAAAAAGGTGGGCATAGTTATGCAGGTGTGTCTGAGAATACTTTTGAGGAGAGGAAGAAAATCCAACCATCAAATGCAATGCCTGCTACAAGAATTAGTGTTCCTGCACCTCCCAAAGGGCCTGATCAGGTAATTCCTGTGGTTAAACCTCAACATATTCAGAAAGTGGAACATGTGGCACCATCACCACAAGATGACACTTCAAAACAGACTACTGACATAACACAAAATTCCCCTCCAAAAGTTGACTTCGCCACAGATCTTTTTGACATGTTGTCTATGGATGGTCCAAATGAAAAGGGCTCAGAGGCAGCGGATGCTACTGCTGATGATAACTGGGCAGGTTTTCAGTCTGCTGCAGAGGCTTCGACAGCTGAGAAAACTGATGTCCCGAAATCAGTTGAAAGTGCACCCCAGTCCACTACTGGAATTGAGGATTTATTTAAAGATTCACCTTCAGTTACACCAAGTTTAACTCCAGAAAAACCACAAAAAGATGTAAAAAATGATATCATGAGCCTCTTTGAGAAGAAGGATACAATATCTCCATTTTCTATGCAACAACAGCAGCTGGCCATGCTGGCACAGCAACAGTCTCTTCTAATGGCTGCTGCTGCTGCTAAATCTGCTGGTGGGGATTCCAAGTACCTGCCCAGCTTACAGCAACATCAGTCTCTTCTAATGGCTGCTGCTGCGGATCCCAATTTAATGGCCAGCTTACAGAAACAACAGTCTCTTTTTATGGCTGCTGCTGCTAAATCTGCTGGTGGGGATCCCAATTTAATGGCCAGCTTACAGAAACAACAGTCTCTTTTTATGGCTGCTGCTGCTAAATCTGCTGGTGGGGATAACAAGTACCCGGCCAGCATACAACAACCTGGGTCCAATATTCCCGTCCAAAGTTGGCCAGCTGCTGGCTACTCAATCCCAGGTGCGATGCCCATGGGCGGTCAGGAAGAGTTTCAGAAACTCATGCAGACAATGAACATGGCTGCAGCACATTCAGCAGGGAGTTCAGTTCACCATCCACAGTCGAGTTTCTATGGTATGGGGCAAGTAGCTCCAGTTAATGGTACAACAACATCGGGAGCGAGCAAACCTCAGTCAGCGTCTCCGGTATCATCGACCACTTCAAAGACAGGGAATGATTATGATTTTTCCTCCTTAACGCAAGGAATGTTTGCAAAACACTGA 1638 0.4505 MNEKANVSKELNAKHKKILEGLLRLPENKECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPHYDRVGIENFIRAKYEDKRWVAKDEKPKSPSSFREEKTPSHLQKPVEKGGHSYAGVSENTFEERKKIQPSNAMPATRISVPAPPKGPDQVIPVVKPQHIQKVEHVAPSPQDDTSKQTTDITQNSPPKVDFATDLFDMLSMDGPNEKGSEAADATADDNWAGFQSAAEASTAEKTDVPKSVESAPQSTTGIEDLFKDSPSVTPSLTPEKPQKDVKNDIMSLFEKKDTISPFSMQQQQLAMLAQQQSLLMAAAAAKSAGGDSKYLPSLQQHQSLLMAAAADPNLMASLQKQQSLFMAAAAKSAGGDPNLMASLQKQQSLFMAAAAKSAGGDNKYPASIQQPGSNIPVQSWPAAGYSIPGAMPMGGQEEFQKLMQTMNMAAAHSAGSSVHHPQSSFYGMGQVAPVNGTTTSGASKPQSASPVSSTTSKTGNDYDFSSLTQGMFAKH 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01373 545 MobiDBLite consensus disorder prediction 506 534 - -
Cca04g01373 545 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Cca04g01373 545 MobiDBLite consensus disorder prediction 209 230 - -
Cca04g01373 545 CDD ArfGap 19 117 - -
Cca04g01373 545 MobiDBLite consensus disorder prediction 265 310 - -
Cca04g01373 545 MobiDBLite consensus disorder prediction 124 190 - -
Cca04g01373 545 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Cca04g01373 545 MobiDBLite consensus disorder prediction 124 146 - -
Cca04g01373 545 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Cca04g01373 545 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Cca04g01373 545 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Cca04g01373 545 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Cca04g01373 545 PANTHER ARF GTPASE ACTIVATOR 1 372 - -
Cca04g01373 545 PANTHER ARF GTPASE ACTIVATOR 411 544 - -
Cca04g01373 545 MobiDBLite consensus disorder prediction 206 312 - -
Cca04g01373 545 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 372 IPR044520 GO:0005096
Cca04g01373 545 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 411 544 IPR044520 GO:0005096
Cca04g01373 545 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Cca04g01373 545 SMART arf_gap_3 17 130 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01373 Cca-Chr4 17929400 17936362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01373 16 118 C2H2 Transcription Factor Family AT4G05330 50.450 4.58e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01373 K12486 - gmx:100807561 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01373 04 17929400 17936362 Cca04g01373 04 17929400 17936362 ECH