Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca04g01372 | ATGAGTCGAGGAAGTGGAGGTGGATACGATCGTCACATCACTATTTTCTCCCCCGAGGGGCGTCTCTTTCAAGTCGAGTATGCTTTCAAGGCTGTTAAGGCTGCTGGAATTACCTCAATTGGTGTCCGAGGAAAGGATTCGATTTGTGTCGTTACTCAGAAGAAGGTTCCGGATAAGCTTTTGGACCAGACAAGTGTATCACATCTCTTTCCCATCACAAAGTACCTTGGTTTATTGGCAACTGGCATGACAGCTGATGCAAGGACACTTGTTCAACAAGCAAGAAATGAAGCAGCTGAGTTTCGCTTTACATATGGATATGAGATGCCTGTTGACGTATTGGCTAAATGGATTGCAGACAAATCACAAGTCTATACTCAACATGCTTATATGAGACCACTTGGAGTAGTTGCTATGGTTTTGGGTATTGATGATGAATATGGACCTCAGCTTTACAAATGTGATCCAGCTGGTCATTACTTTGGTCACAAGGCCACAAGTGCTGGATTGAAGGACCAAGAGGCAATTAATTTCttggaaaagaagatgaagaatgacccttcatttacttacGAGGAGACAGTTCAGACTGCCATTTCTGCTCTGCAATCAGTTCTTCAGGAGGATTTCAAGGCCACTGAGATTGAGGTTGGAGTGGTGCGGAAGGATAATCCAGAATTCAGAGTTTTATCCACCGAGGAAATTGATGAACATTTGACTGCAATAAGTTCCGTGTTCCAAACAATGAGTTTGAGTATGAGCTTGTGTGGAAGTTATAGTCTTCAGCTTCCATATCGCAGAATTGCAAGCTGCAATCTTCACCGCGATGGTGAGCATATTGTTCCTATCAATACGCACCCAAAACCTTCGGAAGCTGAAAATTGTCTTAGGTCAAAATGGAAGATTAATGGCAATAATATTAGGACATGCATTGGAGTCATGACAGTGGCACACTTGGTTGCTCCAGTTGCTGCAAAAGCTGAAGTGGCTGCTTCTATTTATGCTTTGGCTGATGGAAGCCTCGGTGATTGGTTTGGAGGCTTTGTGTACTCAGCTGGACAGCAGGCCAATGAAGCTGTTCAGGGTCAACTATCGTCTCTCAGTTTCACTAGTTTGGCTGTAATTTATGGGGCGGGGCTTGTAACCAGCCTTTCTCCATGTACACTTAGTGTCTTACCGCTGACCCTTGGTTACATTGGTGAGCATGCTTCTTCTGTTGTTGGAGATTCCATTGCATTCTCCTTAGGTCTTGCAACCACATTAGCACTGTTGGGTGTAGGAGCTTCATTTGCTGGAAAGGCTTATGGGCAGATTGGCCAAGGATTACCTTTGGCTGCTTCTGGTTTGGCTATAATTATGGGTCTGAACCTACTTGAGATCATTGAATTACAGCTCCCTTCATTCTTTGAAAGTTTTGATCCACGTGCAGCTGCTGCTAATTTCCCATCAAGTGTACAAGCATACCTGGCTGGGCTTACATTTGCATTAGCTGCCTCACCTTGTAGTACACCTGTTCTGGCCACCCTTCTGGGGTATGTTGCTGCATCCAAGGATCCATTGATTGGAGGCAGCTTACTTTTGACTTACACAACTGGCTATGTTTCCCCCTTACTCTTGGCTGCTTCTTTCGCTGGAGCATTACAGAGTTTGCTTTCATTTCGCAAGTTCTCAGCATGGATCAATCCTATAAGCGGAGCAATGCTGTTAGGTGGTGGTGTATATACTTTCTTAGATAGGTTGTTCCCAGTCACAATGGTGATGTAG | 1764 | 0.4365 | MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTQKKVPDKLLDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDEYGPQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQSVLQEDFKATEIEVGVVRKDNPEFRVLSTEEIDEHLTAISSVFQTMSLSMSLCGSYSLQLPYRRIASCNLHRDGEHIVPINTHPKPSEAENCLRSKWKINGNNIRTCIGVMTVAHLVAPVAAKAEVAASIYALADGSLGDWFGGFVYSAGQQANEAVQGQLSSLSFTSLAVIYGAGLVTSLSPCTLSVLPLTLGYIGEHASSVVGDSIAFSLGLATTLALLGVGASFAGKAYGQIGQGLPLAASGLAIIMGLNLLEIIELQLPSFFESFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPLIGGSLLLTYTTGYVSPLLLAASFAGALQSLLSFRKFSAWINPISGAMLLGGGVYTFLDRLFPVTMVM | 587 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca04g01372 | 587 | ProSiteProfiles | Proteasome alpha-type subunit profile. | 24 | 239 | IPR023332 | - | |
| Cca04g01372 | 587 | SUPERFAMILY | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 8 | 242 | IPR029055 | - | |
| Cca04g01372 | 587 | PANTHER | PROTEASOME SUBUNIT ALPHA/BETA | 1 | 243 | - | - | |
| Cca04g01372 | 587 | Gene3D | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 1 | 244 | IPR029055 | - | |
| Cca04g01372 | 587 | Pfam | Proteasome subunit A N-terminal signature | 9 | 31 | IPR000426 | GO:0006511|GO:0019773 | |
| Cca04g01372 | 587 | SMART | Proteasome_A_N_2 | 9 | 31 | IPR000426 | GO:0006511|GO:0019773 | |
| Cca04g01372 | 587 | ProSitePatterns | Proteasome alpha-type subunits signature. | 9 | 31 | IPR000426 | GO:0006511|GO:0019773 | |
| Cca04g01372 | 587 | CDD | proteasome_alpha_type_6 | 8 | 220 | IPR034642 | GO:0019773 | |
| Cca04g01372 | 587 | Pfam | Cytochrome C biogenesis protein transmembrane region | 376 | 577 | IPR003834 | GO:0016020|GO:0017004 | |
| Cca04g01372 | 587 | PANTHER | PROTEASOME SUBUNIT ALPHA TYPE-6 | 1 | 243 | - | - | |
| Cca04g01372 | 587 | Pfam | Proteasome subunit | 36 | 220 | IPR001353 | GO:0005839|GO:0051603 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca04g01372 | Cca-Chr4 | 17911944 | 17928042 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca04g01372 | 269 | 587 | Chloroplast and Mitochondria Gene Families | AT5G54290 | 70.206 | 9.97e-132 | 387 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca04g01372 | K02730 | - | gmx:100807029 | 598.201 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca04g01372 | 04 | 17911944 | 17928042 | Cca04g01372 | 04 | 17911944 | 17928042 | ECH |