Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01371 ATGGTGTTATCGGCTTCGCCATGTTCCTTGGCGAGAAGCTCGCTGGAGGAGATGCTCGATTCGCTTCGCCGGAGGGATGAGGAGGAAGAGAAGAAGAAGGACTTGCCGCCGGCATTGCCTGCGAGGCCAACCTCCCGGGCACGGCTTCCTCCGGCGCGGCGGTCGCTGCCGAACAACTTTAAGGTCGGCGGCAGCGAGCCTGTCGCGCCGGATAATGTAGATAGTTCCAATGAGGAGAGAGATTTGGGGCTGAAGAGGAGAAGGGGTGGTTTTGGGAGCATGAGGGTGAAGAAAGATGTGGACTCTCCTTATGTGGCACATTCTTCCACTGCTTCATCAGGGGTGGTTTGGGAATTGGAGGGTGATGACAGCATTTCTTATTTCATAAAGAAGAGGCTTCATATTTGGTGTAGGCAACCAAGAGGGCAGTGGGAACTAGGAACGATACAGTCAACTTCAGCAGAGGAAGCATCTGTTTCACTCTCAAATGGAAATGTTATGAAAGTAGCGAGATCAGAGATCCAACCAGCTAATCCTGATTTTTTGGACGGTGTGGATGATCTTATCAAACTTGGTTATTTGAACGAGCCATCAGTTCTTCACAATCTTAAGTGTAGATATTCTCAAGGGATGGTTTATAGCAAAGCAGGTCCCATTTTAATTGCACTTAATCCTTTCAAAGAACTTCAGATGAATGGAAATGATAATGTCTCGGCTTATAGGCAGAGATTTCTTGATAGCCCTCATGTTTATGTTATGGCAGATGCAGCTTATAACAAGATGATGAGATATGAAGTAAATCAGTCCATTATCATAAGTGGTGAGAGTGGATCTGGGAAGACAGAAACCGCTAAAGTTGCATTGCAATACTTAGCTGCACTTGGTGGTGATGGCAGTGGTGCGATAGAAAATAAATTTCTTCAGATAAATCGTATACTGGAAGCTTTTGGGCATGCAAAAACATTGAGGAATAACAACTCCAGCAGATTTGGAAAGTTGTTTGAAATTCATTTCAGCTCCATGGGTAAAATATGTGGGGCTAAAATTCAAACCTTATTATTGGAAAAGTCCAGAGTTGTTCAACTGGCAAGTGGTGAGAGATCGTATCACATATTTTATCAACTTTGTGCTGGATCTTCATCTGGTCTTAAAGAGAGACTGAATATTAAAGGAGTCGGTGAATATAAATATCTAGTTCAAAGTGACTTCATGTCGATTGATGGTGTTGATGATTCTAAAAACTTTCATCAGCTGATGAAAGCGTTGGATGCTGTTCAAATTTGTAAAGAGGATCAAGAGATGATATTTAAGATTCTTGCTGCAATACTGTGGCTGGGAAATATATTATTCCAAGTAGACAGCAAAAATCATATTGAGGTTGTCGATGATGAAGCTGTAACCACTGCTGCCCAACTGATGGGTTGCAGTTCCCAGGAATTAATGACGGCATTATCTACCCAAAAAATCCAATCTGACAAGGATACTATTACCAAAAATTTGACATTGAGGCAGGCAATTGAAAGAAGAGATGCAATTGCAAAATTTATCTATGCAAGCTTGTTTGAATGGCTTGTAGAACAAGTTAACAAGTCACTTGAAGTGGGTAAAAAACGTACTGGGAAATCCATAAGTATCCTTGATATTTATGGATTTCAGACTTTCCAGAAAAACAGCTTTGAACAGTTTTACATAAATTATGCCAATGAGAGGATTCAACAACATTTTAATCGGCATCTGTTTAAACTTGAGCAGGAGGACTATGAATTGGATGGCATTGATTGGACTAAAGTAGATTTTGAGGACAATCAAGGGTGTTTGGATCTATTTGAGAAGAAACCTTTCGGTCTACTCTCTTTGTTGGATGAGGAGTCAAATTTACCCAAGGCTTCTGATTTAACATTTGCCAACAAACTTAAGCACCACCTGAATGCTAATCCTTGCTTCAGAGGGGAAAGAGGCAGAGCTTTCCGTGTTTGTCACTATGCAGGGGAGGTCTTGTACGATACAAATGACTTTCTAGAAAAGAACAGAGATATGTTGTCGTCTGATTCCATTCAACTCCTGTCATCATGTAATTGTGAACTGTTGCAGTTGTTCTCCAAAAAGTTTAGTCAGTCTCAAAAGCAGAGTGTTGCAACAAAGTTCAAGGGTCAATTGTTCAAGTTGATGCATCAGTTGGAGAGCACCACCCCTCACTTTATACGCTGCATAAAGCCAAATGCTAAGCAGCTTCCTGGCATTTATGATGACAACCTTGTCCTACAACAGCTCAGGTGTTGTGGAGTTCTAGAAGTTGTTAGACTTTCAAGGGCTGGATATCCTATTCGAATGACCCATCTAGAGTTTTCCAGAAGGTATGGGTTTCTGCTTTCTGAGCCCAACGTATCACAGGATCCATTGAGCGTCTCAGTTGCTGTTCTGCAAAAATTTAATATCCCTTCTGAAATGTACCATGTTGGCTACTCCAAATTGTATCTTCGAGTAGGCCAGATTGGTTCGCTGGAGGATAGGAGAAAACAGGTTATGCAGGGAATACTTGGGATTCAAAAATGCTTCCGTGGTCATCAAGCGCGTGGTCGTTTCTGTGAACTTAAGAATGGAGTGTCAACATTACAATCATTTATTCGTGGAGAAAATACAAGAAGGAAATATGGTGTTACAGTGAAGTCTTCGATGACGATTTATTCTAGAAAACTGGAGGAGATCCATGCAATCATACTATTACAATCTGTAATTCGTGGGTGGCTAGTTAGAAGGGATGTTAGTCATGTAAATAGGCTGAAGAAATATCCTGAAAATGCTAAACCTAGGCAGAAGTCCAGTATGAAGATATCAGAAATGAAGGATTTGTCCAAAGAGCCAGTTCAGAATCTGCTTTCAGCTTTAGCAGAGCTGCAAAGGCAGGTTGACAAGGCAGATGCAATTGTGGAGCAAAAGGAAGAGGAAAATACTGAATTGAGGGAACGGCTAAAACAATCTGAGAGAAAGAGGATTGAATACGAGACAAAAATGAAATCAATGGAAGAGGCTTGGCAAAAACAGATGGCATCTTTGCAAATGAGTCTTGTTGCTGCTAGAAAGAGCCTTGCTCCTGAGAATGCTACCGTTCAACCTGTGAGACGTGATTTCATGTTGCCTCAAGGTTATGATTCTGAGGATGCTACTTCCATGGGGTCTCGAACACCAGGTGGAAGCACACCAAAGTTTTCTGGTAGTCTATCTACCTCTGATGCAGGGAGACACGTCAATGGTACTTTGACTACAGTCGGTAATCTGATGAAAGAATTTGAACAGCATAGACTGAACTTTGATGATGAAGTAAAAACTTTGAATGAGGTTAAACCAGGGCAGTCTGCTAACACAAATAACGTTGAAGAACTTCGGAAACTTAAACAGAGATTTGAGGGATGGAAGAAACAATACAAGGTTAGATTACGTGAGGCTAAAGCAAGGGTTTATAAATCAGAAACTGAAAAAAGTCGGCGAACATGGTGGGGGAAGTTAAGCTCAAGATCATAA 3519 0.4143 MVLSASPCSLARSSLEEMLDSLRRRDEEEEKKKDLPPALPARPTSRARLPPARRSLPNNFKVGGSEPVAPDNVDSSNEERDLGLKRRRGGFGSMRVKKDVDSPYVAHSSTASSGVVWELEGDDSISYFIKKRLHIWCRQPRGQWELGTIQSTSAEEASVSLSNGNVMKVARSEIQPANPDFLDGVDDLIKLGYLNEPSVLHNLKCRYSQGMVYSKAGPILIALNPFKELQMNGNDNVSAYRQRFLDSPHVYVMADAAYNKMMRYEVNQSIIISGESGSGKTETAKVALQYLAALGGDGSGAIENKFLQINRILEAFGHAKTLRNNNSSRFGKLFEIHFSSMGKICGAKIQTLLLEKSRVVQLASGERSYHIFYQLCAGSSSGLKERLNIKGVGEYKYLVQSDFMSIDGVDDSKNFHQLMKALDAVQICKEDQEMIFKILAAILWLGNILFQVDSKNHIEVVDDEAVTTAAQLMGCSSQELMTALSTQKIQSDKDTITKNLTLRQAIERRDAIAKFIYASLFEWLVEQVNKSLEVGKKRTGKSISILDIYGFQTFQKNSFEQFYINYANERIQQHFNRHLFKLEQEDYELDGIDWTKVDFEDNQGCLDLFEKKPFGLLSLLDEESNLPKASDLTFANKLKHHLNANPCFRGERGRAFRVCHYAGEVLYDTNDFLEKNRDMLSSDSIQLLSSCNCELLQLFSKKFSQSQKQSVATKFKGQLFKLMHQLESTTPHFIRCIKPNAKQLPGIYDDNLVLQQLRCCGVLEVVRLSRAGYPIRMTHLEFSRRYGFLLSEPNVSQDPLSVSVAVLQKFNIPSEMYHVGYSKLYLRVGQIGSLEDRRKQVMQGILGIQKCFRGHQARGRFCELKNGVSTLQSFIRGENTRRKYGVTVKSSMTIYSRKLEEIHAIILLQSVIRGWLVRRDVSHVNRLKKYPENAKPRQKSSMKISEMKDLSKEPVQNLLSALAELQRQVDKADAIVEQKEEENTELRERLKQSERKRIEYETKMKSMEEAWQKQMASLQMSLVAARKSLAPENATVQPVRRDFMLPQGYDSEDATSMGSRTPGGSTPKFSGSLSTSDAGRHVNGTLTTVGNLMKEFEQHRLNFDDEVKTLNEVKPGQSANTNNVEELRKLKQRFEGWKKQYKVRLREAKARVYKSETEKSRRTWWGKLSSRS 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01371 1172 Gene3D Kinesin motor domain 183 772 IPR036961 -
Cca04g01371 1172 MobiDBLite consensus disorder prediction 19 37 - -
Cca04g01371 1172 Coils Coil 955 1010 - -
Cca04g01371 1172 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 130 179 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cca04g01371 1172 MobiDBLite consensus disorder prediction 19 86 - -
Cca04g01371 1172 ProSiteProfiles IQ motif profile. 842 870 IPR000048 GO:0005515
Cca04g01371 1172 SMART iq_5 840 862 IPR000048 GO:0005515
Cca04g01371 1172 SMART iq_5 863 885 IPR000048 GO:0005515
Cca04g01371 1172 SMART iq_5 900 922 IPR000048 GO:0005515
Cca04g01371 1172 ProSiteProfiles IQ motif profile. 901 929 IPR000048 GO:0005515
Cca04g01371 1172 Pfam Myosin head (motor domain) 185 827 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca04g01371 1172 Gene3D - 845 889 - -
Cca04g01371 1172 Gene3D - 773 840 - -
Cca04g01371 1172 ProSiteProfiles IQ motif profile. 864 893 IPR000048 GO:0005515
Cca04g01371 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 922 IPR027417 -
Cca04g01371 1172 MobiDBLite consensus disorder prediction 1052 1081 - -
Cca04g01371 1172 ProSiteProfiles Myosin motor domain profile. 183 839 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca04g01371 1172 SMART MYSc_2a 177 840 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca04g01371 1172 Pfam IQ calmodulin-binding motif 903 920 IPR000048 GO:0005515
Cca04g01371 1172 PRINTS Myosin heavy chain signature 213 232 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca04g01371 1172 PRINTS Myosin heavy chain signature 267 292 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca04g01371 1172 PRINTS Myosin heavy chain signature 311 338 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca04g01371 1172 PRINTS Myosin heavy chain signature 542 570 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca04g01371 1172 PRINTS Myosin heavy chain signature 595 623 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca04g01371 1172 Gene3D - 367 423 - -
Cca04g01371 1172 CDD MYSc_Myo8 197 827 IPR036022 -
Cca04g01371 1172 PANTHER MYOSIN-2 ISOFORM X1 111 1171 - -
Cca04g01371 1172 Coils Coil 12 32 - -
Cca04g01371 1172 MobiDBLite consensus disorder prediction 1047 1081 - -
Cca04g01371 1172 Gene3D Myosin VI head, motor domain, U50 subdomain 424 531 - -
Cca04g01371 1172 Gene3D - 554 729 - -
Cca04g01371 1172 PANTHER MYOSIN 111 1171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01371 Cca-Chr4 17852644 17864484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01371 1 1167 Myosins gene family AT5G54280 59.083 0.0 1422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01371 K10357 - gmx:100802614 1900.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01371 04 17852644 17864484 Cca04g01371 04 17852644 17864484 ECH