Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01369 ATGGCAGCCACAGCAAGCACTGGCACTGTCCTTAAACCAACACCTTTCCTTGGCCTAAGTAGGGGAATTAATGCCAACCCTCTTAGAGATGTTGTCTCCATGGGAACTGGCAAATACACCATGGGAAATGAACTGTGGTATGGACCAGATAGAGTGAAATACTTGGGACCCTTTTCAGCTCAGACCCCTTCATACTTGACTGGAGAATTCCCAGGGGACTATGGATGGGACACTGCTGGGTTGTCTGCTGATCCTGAAGCATTTGCCAAGAACAGGGCTCTTGAGGTGATCCATGGGCGTTGGGCTATGCTTGGAGCACTAGGTTGCATCACCCCAGAAGTGCTTGAGAAGTGGGTAAGAGTGGACTTCAAGGAGCCAGTTTGGTTCAAAGCAGGAGCTCAGATATTCTCAGAGGGTGGCCTTGACTATTTGGGGAACCCCAACCTTGTACATGCACAAAGCATCTTGGCAGTCCTAGGCTTCCAAGTGGTTCTCATGGGACTAGTTGAAGGGTTCAGAATCAATGGCCTTCCAGGGGTTGGAGAGGGCAATGATCTCTACCCTGGTGGTCAGTACTTTGATCCTCTTGGCCTTGCTGATGATCCTGTCACCTTTGCTGAGCTCAAGGTCAAGGAAATCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTCCAAGCCATTGTGACTGGGAAAGGACCTCTTGAGAACCTTTTGGACCACCTTGACAACCCTGTGGCCAACAATGCTTGGGTCTATGCCACCAAGTTTGTGCCTGGGTCTTGA 795 0.4981 MAATASTGTVLKPTPFLGLSRGINANPLRDVVSMGTGKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01369 264 Pfam Chlorophyll A-B binding protein 63 230 IPR022796 -
Cca04g01369 264 Gene3D Chlorophyll a/b binding protein domain 53 257 - -
Cca04g01369 264 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 2 264 - -
Cca04g01369 264 SUPERFAMILY Chlorophyll a-b binding protein 45 261 - -
Cca04g01369 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 264 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01369 Cca-Chr4 17845023 17847465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01369 9 263 Chloroplast and Mitochondria Gene Families AT2G05070 69.582 4.36e-122 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01369 K08914 - vvi:100260599 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01369 04 17845023 17847465 Cca04g01369 04 17845023 17847465 ECH