Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01365 ATGGAGGAGTCATGCGCTTTGTGTGAGAAGAGGGCGATGATGCTGTGCGACTCGGACCAGGCTAAGCTATGCTGGGAGTGCGACGAGAAAGTGCACAGCGCCAATTTCCTTGTGGCCAAGCACTCGCGCGTCCTTCTCTGCCGCTTCTGCCACTCGCCCACGCCGTGGAAGGCTTCGGGGACCAAACTCACGCCAACGGTGTCGTTTTGCCACCGCTGCCTCGCCAATCGCCGTCAACCACACCGCCCTCACTGCGTCCaggatgtggatgtggatgtgtatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatagtgagggagaagatgaggaagaggaggagaaggagaaggaggaaggggaTAATCAAGTGGTTCCCATGTCCTCTGGTTCCGCCACGTCACCGCCTTCTGCTGCGGCTTTAGCATTCAAGCGATTCAGAAACCACTCTTTCTCCCTCGATTCTCATGATGAGGCAGCGTGTTCTTCGTCTGAGATGCTTAGTGCAGCATTGCCCAGTGATGAATCGACCTCGGTGAGCGTATTGAAGAGGTATCGAGTTGATGATTGA 603 0.4362 MEESCALCEKRAMMLCDSDQAKLCWECDEKVHSANFLVAKHSRVLLCRFCHSPTPWKASGTKLTPTVSFCHRCLANRRQPHRPHCVQDVDVDVYDDDDDDDDDDDDDDDDDDDDDSEGEDEEEEEKEKEEGDNQVVPMSSGSATSPPSAAALAFKRFRNHSFSLDSHDEAACSSSEMLSAALPSDESTSVSVLKRYRVDD 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01365 200 MobiDBLite consensus disorder prediction 176 191 - -
Cca04g01365 200 PANTHER OS08G0178800 PROTEIN 4 174 - -
Cca04g01365 200 MobiDBLite consensus disorder prediction 91 129 - -
Cca04g01365 200 Pfam B-box zinc finger 4 45 IPR000315 GO:0008270
Cca04g01365 200 SMART bboxneu5 1 46 IPR000315 GO:0008270
Cca04g01365 200 MobiDBLite consensus disorder prediction 85 148 - -
Cca04g01365 200 MobiDBLite consensus disorder prediction 176 200 - -
Cca04g01365 200 CDD Bbox1_BBX-like 5 46 - -
Cca04g01365 200 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01365 Cca-Chr4 17805390 17806424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01365 2 78 C2C2-CO-like Transcription Factor Family AT5G54470 62.338 3.78e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca04g01365 zf-B_box 3.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01365 - - gmx:100818267 226.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01365 04 17805390 17806424 Cca04g01365 04 17805390 17806424 ECH