Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01362 ATGGCATTAACTTGTACCCTCACATCCTTGACAACATTGCTTTGCCTATGTATGTTTTGCGTGAATGCAGCTACCAACAAAGAAATTCTGCGAATGGGGCAATCCATGGGAACCTCAGACACTGTTCTTTCCCGTGGCGGAAAATTCGAACTGCGCTTTTTCTCCAGAACAAGAGAGAACTCCACCATGTACTATGTTGGCATCATATGGAAAAAAAAGGTTCCAAACGACAAGATTGTGTGGGTTGCTAATAGAGACTACGCACTTCAATCATCCTCAGCGGTTCTTACAATTCAACCTGATGGAAATATGGTGATCATAGATGGTCAAATGATGTACCGCGTGAACAAGGCTTCAAACAATTTTGATACCTATGCCATGCTTTTGGATTCTGGAAACTTGCTACTATTAAACACCTCAAATCAAGCGATTTTGTGGCAGAGTTTTGATAATCCCACGAATACCCTTTTACCAGGAATGAACCTAGGACAGGATCCTCTCTTTGGTCACTCTTGGTCATTGATATCATGGAAAAGGGCAGATGACCCTGCCCCAGGAGCTTTTTCCCTAGAATATGATTCTACCAGTGACAGGGCGAGTCTAATTGTCAACAATGGTTCTAATGTGCTCTGGATTGATGATCATTCAAATGATACTATTAACAACGTTATTAGCCGAAGTGATGTGGTATATAACGCAGGTTATTTCACTTGGCCAGTTGGTAATGACTCTGTGCTGGTGCTAGAAGTGTCTGGGGAGATCAACCAGGAGTATTGGTCAGAAGAAGAAACACGTTGGAAGTCTAAGCAGTCATCCAAGTGTGGAACCAACAATTCATGTGGAGCTTTTTCCATTTGTGACCCGCAAGCTCTTCACCCTTGTGTCTGTCTCCCTGGTTTCGAGCCACATGATGCTGATTCTTGGAGGATGGGGGACACATCCGCTGGCTGTGTCAGGAAAGTACAACTGTCCTGCAGCGGGGATGGATTCTCCCAGTTAAATGAAGTTCAATTACCACAAACTTTCGACGGATACAGCCAGCAAAAGATTGGTTCAGCAAGATTGTGTGAAACAATTTGCTTCACAAAGTGTTCCTGTGTTGCCTATGCTTACGATTTTAGAGGTATCTGCCAGTTGTGGCTTGGTCCAGTATCGAGTCTAAAGAACATCTCAACATATGTGTACAATTCTGATAATCCCAATCCAGTTTTTAACCTAAGACTTGCTGCCTCAGAATTTATTAATGCTGATTCAAACGCAAGAAATGGAAAAGAAAATGATTTTCGCAAGCATGAAAATGGGCTGCGGAATATCCTTTTAATTGTTATACTGGTCTTATTTCTATCATTTCTTGTATTGGGCCTATTCGTTTACTGGACTagaaagcaaaggaataaagGGGAAGACTTGCTACATTTTGATGCAAGCATGAGCATGAAAGCCGAAAGTTCTGATCTTACTGAAGGACAAAGGGGTGCGAAAGTTGAAAAGAAGGAAGTCAAATTGCCATTGTTCAGTTTTGTGAGTGTTGCAGCAGCAACTGATAATTTTTCAGATGCAAATAAACTTGGTGAGGGTGGCTTTGGACCTGTTTACAAGGGTGTATTATTGAATGGGGATGAGGTTGCTGTGAAAAGGCTATCGCGAAGATCTGGTCAAGGATGGGAAGAGCTGAGAAATGAAGCCTTATTAATTGCAAAGCTCCAACACAACAATCTTGTTAGACTTCTTGGCTGCTGCATTGATCGAGATGAAAAGATATTGATTTATGAATTTATGCCTAACAAAAGCTTGGATGTTTTTCTTTTTGATGCAACAAAAAGAAGGATGCTAGATTGGGGAACCCGAGTTAGGATAATTGATGGGATTGCCCAAGGAATCCTTTATCTTCATCAGTATTCCAGGTTTAGGATCATTCACCGGGATTTAAAAGCTAGCAACATATTGTTAGACACCAACATGAATCCTAAAATATCAGATTTTGGAATGGCAAGAATATTTGGTGAGAATGAACTTCAAGCAAATACAAACCGAATAGTTGGAACTTATGGCTACATGTCCCCTGAATATGCTATGGAAGGGCTTTTCTCCATAAAATCGGACGTGTTTAGCTTTGGGGTCCTTCTGTTGGAGATTGTGAGTGGCAAGAAGAATACTGGCCTTTATCAAACAAATTCCTTCAATCTTCTTGGATATGCTTGGGATCTATGGACAAGAAATTCTGGAATGGACTTAATGGATCCTTCACTGGATGATAGTGATACTGCTAGTTGTAGTAAGCATACAGTGCCAAGATATGTGAACATAGGACTTCTCTGCGTTCAAGAAAGTCCATCAGAAAGGCCAACCATGTCTGATGTTGTGTCAATGATTGGGAATGACACTGTGGCTCTTCCTTCTCCTAAACCACCTGCATTTCTAAATGTGAGAGGTAATGAAAAATCAACATTGCCATGTAGCACGTCAGAAAGCTTTTCTGTGAATGTTATCACAGATTCAATAGTGGAAGCAAGATGA 2517 0.4084 MALTCTLTSLTTLLCLCMFCVNAATNKEILRMGQSMGTSDTVLSRGGKFELRFFSRTRENSTMYYVGIIWKKKVPNDKIVWVANRDYALQSSSAVLTIQPDGNMVIIDGQMMYRVNKASNNFDTYAMLLDSGNLLLLNTSNQAILWQSFDNPTNTLLPGMNLGQDPLFGHSWSLISWKRADDPAPGAFSLEYDSTSDRASLIVNNGSNVLWIDDHSNDTINNVISRSDVVYNAGYFTWPVGNDSVLVLEVSGEINQEYWSEEETRWKSKQSSKCGTNNSCGAFSICDPQALHPCVCLPGFEPHDADSWRMGDTSAGCVRKVQLSCSGDGFSQLNEVQLPQTFDGYSQQKIGSARLCETICFTKCSCVAYAYDFRGICQLWLGPVSSLKNISTYVYNSDNPNPVFNLRLAASEFINADSNARNGKENDFRKHENGLRNILLIVILVLFLSFLVLGLFVYWTRKQRNKGEDLLHFDASMSMKAESSDLTEGQRGAKVEKKEVKLPLFSFVSVAAATDNFSDANKLGEGGFGPVYKGVLLNGDEVAVKRLSRRSGQGWEELRNEALLIAKLQHNNLVRLLGCCIDRDEKILIYEFMPNKSLDVFLFDATKRRMLDWGTRVRIIDGIAQGILYLHQYSRFRIIHRDLKASNILLDTNMNPKISDFGMARIFGENELQANTNRIVGTYGYMSPEYAMEGLFSIKSDVFSFGVLLLEIVSGKKNTGLYQTNSFNLLGYAWDLWTRNSGMDLMDPSLDDSDTASCSKHTVPRYVNIGLLCVQESPSERPTMSDVVSMIGNDTVALPSPKPPAFLNVRGNEKSTLPCSTSESFSVNVITDSIVEAR 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01362 838 CDD STKc_IRAK 523 791 - -
Cca04g01362 838 Pfam PAN-like domain 325 382 IPR003609 -
Cca04g01362 838 SMART ntp_6 325 399 IPR003609 -
Cca04g01362 838 Pfam Domain of unknown function (DUF3403) 793 838 IPR021820 GO:0004674
Cca04g01362 838 Gene3D Phosphorylase Kinase; domain 1 476 592 - -
Cca04g01362 838 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 24 836 - -
Cca04g01362 838 Pfam Protein tyrosine and serine/threonine kinase 521 790 IPR001245 GO:0004672|GO:0006468
Cca04g01362 838 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 183 IPR036426 -
Cca04g01362 838 SMART blect_4 33 152 IPR001480 -
Cca04g01362 838 Gene3D Transferase(Phosphotransferase) domain 1 593 797 - -
Cca04g01362 838 SMART serkin_6 517 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01362 838 Pfam D-mannose binding lectin 79 178 IPR001480 -
Cca04g01362 838 Pfam S-locus glycoprotein domain 228 303 IPR000858 GO:0048544
Cca04g01362 838 ProSiteProfiles Bulb-type lectin domain profile. 27 149 IPR001480 -
Cca04g01362 838 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 24 836 - -
Cca04g01362 838 SUPERFAMILY Protein kinase-like (PK-like) 501 822 IPR011009 -
Cca04g01362 838 PIRSF SRK 1 838 IPR024171 GO:0004674
Cca04g01362 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Cca04g01362 838 ProSiteProfiles Protein kinase domain profile. 517 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01362 838 ProSiteProfiles PAN/Apple domain profile. 325 397 IPR003609 -
Cca04g01362 838 Gene3D - 22 149 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01362 Cca-Chr4 17716179 17720660 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01362 422 807 Receptor kinase-like Gene Family AT4G23190 50.255 1.77e-124 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01362 PK_Tyr_Ser-Thr 5.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01362 - - gmx:100811148 1241.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01362 04 17716179 17720660 Cca04g01362 04 17716179 17720660 ECH