Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01356 ATGGTAGAAACGGGAACAAATAATGTCAAAGCCATAGTTCTTGATAAAAAAGAAGATATCTTGGAATGTagagttgatgtattgtcaagaatgaaggatcttagattactcatattatatcatcaaaacttttcgggaagcctcgattctctttcccacatgctgcgatatcttttgtggcatagttatccttttgattctttgccatcaaattttACGGCTGCTCATATTGTGGAATTGAATATGCCAAATAGTAGCATCAAACGTGTTTGGGAAGGCCGCAAGCAATTCCCAAGTTTGAAAAGGATGGATTTGAGCAACTCCAAATGTCTTGTTGAGACTCCAGTATTTTTCGGGACCCCAAAACTTGAGCGGCTTGATCTTTCAGGATGCATAAGTTTATTACATGTCCATCCATCATTAGGAAGTCTTGGAAAACTTACTTTCTTGAGTTTAAGAAATTGTACCAATCTAGTCAGCATCGACTTTGGGAGGGATTCATCAGGGGGAAGGTATTTTAAAATGGTGTCTGGATCTCGTGATCATAGGTCAGGGTTATATCTTTTTGATTGTCCAAAACTGTCTCATCAATGGCAGCTCGATTTGGGGCTCTTGGATTATTTTAAAGTCAAAGACGAACTGTTATGGCTTATAAGACAAATTGAGGAACCCTGTCATTTTCGATGTGGCTGTGACATTGTTTTCCCTTGGGACATGGAAGTTATTCCCAGGTGGTTCAAAAACGAATTTGCCAGTTGTTCAATTATGAGGATAAAGGACTTCAATATGAATGATGATTGGCTTGGCTTTGCCTTTTACGTTACATTTAAGGTAAACAATCCTCCTTCTCCGGACTGTTCTTTATCTTCGTCAGTGCGGCATCCGTTTTATCTTTCTTTTGAAAGTGAACACACTGAAGAATACTTTGACATGCCTCTTGATTTGAAGATGGAAAAGATTGACAAATCAGAATATATTTGGGTCATTTATATCTCTCGACAACACTGCCATTTTGTGAAAACTGGGGCACATATCACGTTTAAAGCCCACTCGGGTATTGAGATCAGTAAATGGGGGATGCGGAGTATATTCAGGGATGATTTAGAAGGCTTGAAAAGGAAGGCAGAATCAGAAGGAGATTTTCATGACACATCCCAACACAGTGTTGCTTTTGATGATACGAAGACGAAGTCGAGAATATTGAAGCAAAGGCCAAAGAAATCAGTCTCTCCAATGTGGGGCTTTAATACGCTTATGGAAGCTCACAGACATCTTTTCCAGAGATTGAAATCATTGGACCCAAGTGAAGGACAAGAAGAACCATTGAAAGGACAACCTGGAGGATCATGTGGATGTTTAGCCTAG 1365 0.356 MVETGTNNVKAIVLDKKEDILECRVDVLSRMKDLRLLILYHQNFSGSLDSLSHMLRYLLWHSYPFDSLPSNFTAAHIVELNMPNSSIKRVWEGRKQFPSLKRMDLSNSKCLVETPVFFGTPKLERLDLSGCISLLHVHPSLGSLGKLTFLSLRNCTNLVSIDFGRDSSGGRYFKMVSGSRDHRSGLYLFDCPKLSHQWQLDLGLLDYFKVKDELLWLIRQIEEPCHFRCGCDIVFPWDMEVIPRWFKNEFASCSIMRIKDFNMNDDWLGFAFYVTFKVNNPPSPDCSLSSSVRHPFYLSFESEHTEEYFDMPLDLKMEKIDKSEYIWVIYISRQHCHFVKTGAHITFKAHSGIEISKWGMRSIFRDDLEGLKRKAESEGDFHDTSQHSVAFDDTKTKSRILKQRPKKSVSPMWGFNTLMEAHRHLFQRLKSLDPSEGQEEPLKGQPGGSCGCLA 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01356 454 SUPERFAMILY L domain-like 25 162 - -
Cca04g01356 454 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 161 IPR044974 GO:0006952
Cca04g01356 454 MobiDBLite consensus disorder prediction 434 454 - -
Cca04g01356 454 PANTHER DISEASE RESISTANCE PROTEIN TAO1-LIKE 5 161 - -
Cca04g01356 454 Gene3D Ribonuclease Inhibitor 17 201 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01356 Cca-Chr4 17577550 17589386 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01356 3 161 WRKY Transcription Factor Family AT4G12020 36.571 3.03e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01356 - - var:108332841 244.588