Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01354 ATGTCAATTTGGATCAATGGTTGTGTTCCAAGGAATAAATCTAGTTGCAATAACAGTTATACCGATGGCTTCTTCAAGTACTCACACATGAAATGGCCGGACACATCTTCATCATGGTTTAGTAAGACCATGGACCTTGATGAATGTGAGAAGTCGTGTCTTGAAAACTGTTCCTGTACAGCATATGCCAACTTAGATATCCGTGATGGAGGAAGTGGCTGTTTACTTTGGTTTAATACTCTAGTTGACTTGAGAAATTTTTCTCAATCGGGGCAAGACCTTTATATCAGAGTCCCTGCTTCAGAATTAGATCATGCTGGCCACGGAAGCATCAAGAAAAAGATAGTCGGAATCAGTGTTGGTGTAACTGTTTCTGGATTAATAATCATATGTGCAGGCATATTTATATCTAAAAATCCAGGGGCTGCAAGAAAAATTTACAACAAGCATTACAGAAGTATATTGAAGAAGGAAGACATTGATTTTCCGACTTTCGATTTTTTGGTCTTAGCTAATGCCACTGAAAACTTTTCAACTAAAAACATGCTTGGAGAAGGTGGATTTGGACCAGGCACATTGATAGATGGGAAAGAGATAGCTGTGAAAAGACTTTCAAAGAAATCTGAACAGGGGTTGGATGAGTTAAAAAATGAAGTGGCGTTGATAGCAAAACTTCAGCACCATGAAACCAAAAGGAAGATCCTAGATTGGCATAAGCGATTCAACATTATTAATGGTATTGCTCGAGGACTTTTGTATCTTCATCAAGATTCAAGGTTGAGGATTATTCACAGAGATCTTAAAACTAGTAATATTTTACTAGATGAAAATTTGGATCCCAAAATTTCAGATTTTGGCTTGGCTCGATCATTCTTGGGAGATCAAGTTGAAGCTAACACAAATAGGGTGGCTGGGACCTATGGTTACATGCCTCCTGAATATGCAACACGTGGACATTTTTCCGTGAAATCAGATGTCTTTAGTTATGGTGTGATAGTATTAGAGATTTTAAGTGGAAAGAAAAATAGAGAATTTTCAGACCCAGGACACTACAATAATCTTTTAGGACATGCATGGAGATTATGGACCGAAGAGAGGGCGTTGGATCTACTAGATGATGTGTTGGGAGAGCAGTGTGAGCCTTTAGAAGTCTTACGATGCATACAAGTAGGCCTATTATGTGTGCAACAAAGACCAGAAGATAGGCCAGACATGTCAACAGTGGTTTTAATATTGAATGGTGATAAATATTTTATGTCCAAGCCAAAGGTTCCTGGCTTCTACACAGAAACAGATGTTACATCTGAAGTTAATTCTTCACCAGCAAAACACAAACTATGCTCGATTAGTGAACTTTCCATCACAATGTTAGACGCAAGATAG 1383 0.3825 MSIWINGCVPRNKSSCNNSYTDGFFKYSHMKWPDTSSSWFSKTMDLDECEKSCLENCSCTAYANLDIRDGGSGCLLWFNTLVDLRNFSQSGQDLYIRVPASELDHAGHGSIKKKIVGISVGVTVSGLIIICAGIFISKNPGAARKIYNKHYRSILKKEDIDFPTFDFLVLANATENFSTKNMLGEGGFGPGTLIDGKEIAVKRLSKKSEQGLDELKNEVALIAKLQHHETKRKILDWHKRFNIINGIARGLLYLHQDSRLRIIHRDLKTSNILLDENLDPKISDFGLARSFLGDQVEANTNRVAGTYGYMPPEYATRGHFSVKSDVFSYGVIVLEILSGKKNREFSDPGHYNNLLGHAWRLWTEERALDLLDDVLGEQCEPLEVLRCIQVGLLCVQQRPEDRPDMSTVVLILNGDKYFMSKPKVPGFYTETDVTSEVNSSPAKHKLCSISELSITMLDAR 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01354 460 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 229 458 - -
Cca04g01354 460 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 229 458 - -
Cca04g01354 460 ProSiteProfiles Protein kinase domain profile. 177 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01354 460 Pfam PAN-like domain 16 84 IPR003609 -
Cca04g01354 460 CDD PAN_AP_plant 13 99 - -
Cca04g01354 460 SUPERFAMILY Protein kinase-like (PK-like) 162 430 IPR011009 -
Cca04g01354 460 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 228 - -
Cca04g01354 460 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 228 - -
Cca04g01354 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Cca04g01354 460 Gene3D Hepatocyte Growth Factor 16 96 - -
Cca04g01354 460 ProSiteProfiles PAN/Apple domain profile. 16 99 IPR003609 -
Cca04g01354 460 Gene3D Transferase(Phosphotransferase) domain 1 227 421 - -
Cca04g01354 460 SMART serkin_6 177 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01354 460 SMART ntp_6 19 98 IPR003609 -
Cca04g01354 460 Pfam Protein kinase domain 235 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01354 460 Gene3D Phosphorylase Kinase; domain 1 140 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01354 Cca-Chr4 17525671 17528015 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01354 165 460 Receptor kinase-like Gene Family AT4G23140 46.686 5.60e-98 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01354 Pkinase 1.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01354 - - gmx:100784066 734.947