Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01353 ATGGcttcttcttcttcttcttcCAATCCCTCCGACAGCATCCAAAACTACAGAtacgatgtattcatgagtttcagaggtgaggacactcgtaactcctttgttgatcatctctacgctcatttcatccgaaaaggtctttttgtctttaaggacgacaaaaggctccagaaaggagaatccatttcagaacagcttcgacaagcgattaaagattcacgggtttcaatcatcgtcttctccaaaaagtatgcttcctcatcgtggtgtctagacgaaatggccgctatagccgattgcaaacaacagttgaagcaaacagttttccccgttttctacgatgtggatccatctgatgtaagatatcagtgtggggtatacgaaaatgactttgatttacacagacggaagaagttcgaacacgatccagacaagattcgtcgatgggagagagctatgacggatttggccaattctgttggttgggatgtcaggaacaagccagagtctgaagagattgaaagtattgttcaagcagtaataaaaaaattgggtcataaattttcatcatttgctagtgaccttattggaatacaatcacgtatacaaacattagaaaatatgttgagattaagtttaaagaatgatgatgttttaattttaggaatttgggggatgggtggaataggaaagacaactcaagctgctgtcttatatgataaaatttctcataagtttgatgcttgttgtttcattgagaatgtgagcaaaatttatagagatggtggccatactgctatacaaaagcaaattcttcgtcaaactttacaagagaaaaatctagaaatgtatagtccttttgaaatatcagggatcgtaaggaacaggctacacaacataaaggtccttatagttctcgacgatgttgatcaaatagagcaattgcaggaattggccataaatcctaaatttctttttaaaggaagtagaattattgttaccactagagatggacatattctaaaatcgcatgaaaatcatgtattgcacaaggtttcattattgaatgaaaatgaggctcgtgaactatttttaagaaaggccttcaaaaatgaagaccaaagtagtagttgtatggagttgattcctgaggtactaaaatatgtccaatgtcttccattagcaattaaagtaatgggttctttcttgtgcactcgagatgctatccaatggagagatgccttagatagattgaagacaaatccaaatgatgaaattatgaatgtacttgaaataagtcttgatggactagaatatgaagaaaaagaaatatttttgcacattgcatgtttctttaaaggggagagggaggattatgttaagcgaattctagaatgttgtggattgcaccctcatattggaattccaagaatcattgagaaatccttgataactattagagatcaagaaattcatatgcatgatatgtttcaagaattaggaaagaaaattgttcgcaaccgatttcctgaagagccaggatcatggagtagaatatggcgctatgaagatttCGATCAAGTCTTGATGGTAGAAACGGGAACAAATAATGTCAAAGCCATAGTTCTTGATAAAAAAGAAGATATCTTGGAATGTagagttgatgtattgtcaagaatgaaggatcttagattactcatattatatcatcaaaaattttcgggaagcctcgattctctttcccacatgctgcgatatcttttgtggcatagttatccttttgattctttgccatcaaattttACGGCTGCTCATATTGTGGAATTGAATATGCCAAATAGTAGCATCAAACGTGTTTGGGAAGGCCGCAAGAAATTCCCAAATTTGAAACGGATGGATTTGAGCAACTCCAAATATCTTGTTGAGACTACAGATTTTTTTGGGACCCCAGAACTTGAGCGACTTGATCTTTCGGGATGCATAAGTTTATTACAAGTCGATCCATCATTAGGAAGTCTTGGAAAACTTGCTTTCTTGAGTTTAAGAAATTGTACCAATCTAGTCAGCATCGACTTTGACAATGGATCTAATCTAAGTTCTCTGACAGTTCTACATTTATCTGGTTGCACTAAACTTGAATACACGccaaattttacaaaggcagaaaatctaaagtaccttgacttcgatggatgtgcaagtttagccatggttaatgaatctattggagctctttcaggactcaccttcttgagtttgagaaactgcgaaaatcttgttagtataccTAACAACATTAATGCCATGAGATCACTTCAAACTCTAGATTTAGGTGGCTGTTTGAAACTTGATGACTTGCCCGTAGGACAAGTTTTTAACTCTTTTTCTTTGGAATCCTTGATATTTTTGGACCTAGGCTTTTGTAATCTACTTAAAGTACCTGATGCTATTAGTGTGTTGGGGTGTTTAGAAAGACTGAATCTACAGGGAAACAAATTTCAATCAGTATGTGCAATGACATCTCTACATTGTCTTGCATATTTAAACTTATCACATTGCCATGATCTTATCTGGTTGCCTGAGCTTCCATCAGGGAGGGAATCATCAGGGGGAAGGTATTTTAAAATGGTGTCTGGATCTCGTGATCATAGGTCAGGGTTATATCTTTTTGATTGTCCAAAACTGGCGGCTCGGAGGAGTTCCTTAATGCAGCATTTTCTTAGTTTTCGGCAACCCAAACTTTTTTGGCTTGCAAGACTAATTGAGGAACCCTGTCATTTTCGATGTGGCTGTGACATTGTTTTCCCTTGGGGCGCCAATAAAGGTATTCCCAGGTGGTTCAAAAACGAATTTGCCAGTTGTTCAATTATGAGGATAAAGGACTTCAATATGAATGATGATTGGCTTGGCTTTGCCTTTTATGTTATATTTAAGGTAAACAATCCTCCTTCTCCGGATTGTTCTTTTTCTTCGTCAGTGCGGCATCCGTTTTATCTTTCTTTCGAAAGTGAACACACGGAAGAATACTTTGACATGCCTCTTGATTTGAAGATGGAAAAGATTGATAAATCAGAATATGTTTGGGTGATTTATATCTCTCGACAACACTGCCATTTTGTGAAAACTGGGGCACATATCACGTTTAAAGCCCACTCGGGTATTGAGATCAGTAAATGGGGGATGCGGAGTATATTCAGGGAAGATTTAGAAGGCTTGAAAAGGAAGGCAGAATCAGAAGGAGATTTTCATGACACATCCCAACACAGTGTTGCTGTTGATGATGTAACAAATAGCATCACCAACCCTGGGCCCAAAATTCAGCTTCCTTACAATTGGTTGGTGACAGAGCAAGATGAAGTCGAGAATATTGAAGCAAAGGCCAAAGAAAACAGTCTCTCCAATGTGGGGCTTTAA 3414 0.1834 MASSSSSSNPSDSIQNYRYDVFMSFRGEDTRNSFVDHLYAHFIRKGLFVFKDDKRLQKGESISEQLRQAIKDSRVSIIVFSKKYASSSWCLDEMAAIADCKQQLKQTVFPVFYDVDPSDVRYQCGVYENDFDLHRRKKFEHDPDKIRRWERAMTDLANSVGWDVRNKPESEEIESIVQAVIKKLGHKFSSFASDLIGIQSRIQTLENMLRLSLKNDDVLILGIWGMGGIGKTTQAAVLYDKISHKFDACCFIENVSKIYRDGGHTAIQKQILRQTLQEKNLEMYSPFEISGIVRNRLHNIKVLIVLDDVDQIEQLQELAINPKFLFKGSRIIVTTRDGHILKSHENHVLHKVSLLNENEARELFLRKAFKNEDQSSSCMELIPEVLKYVQCLPLAIKVMGSFLCTRDAIQWRDALDRLKTNPNDEIMNVLEISLDGLEYEEKEIFLHIACFFKGEREDYVKRILECCGLHPHIGIPRIIEKSLITIRDQEIHMHDMFQELGKKIVRNRFPEEPGSWSRIWRYEDFDQVLMVETGTNNVKAIVLDKKEDILECRVDVLSRMKDLRLLILYHQKFSGSLDSLSHMLRYLLWHSYPFDSLPSNFTAAHIVELNMPNSSIKRVWEGRKKFPNLKRMDLSNSKYLVETTDFFGTPELERLDLSGCISLLQVDPSLGSLGKLAFLSLRNCTNLVSIDFDNGSNLSSLTVLHLSGCTKLEYTPNFTKAENLKYLDFDGCASLAMVNESIGALSGLTFLSLRNCENLVSIPNNINAMRSLQTLDLGGCLKLDDLPVGQVFNSFSLESLIFLDLGFCNLLKVPDAISVLGCLERLNLQGNKFQSVCAMTSLHCLAYLNLSHCHDLIWLPELPSGRESSGGRYFKMVSGSRDHRSGLYLFDCPKLAARRSSLMQHFLSFRQPKLFWLARLIEEPCHFRCGCDIVFPWGANKGIPRWFKNEFASCSIMRIKDFNMNDDWLGFAFYVIFKVNNPPSPDCSFSSSVRHPFYLSFESEHTEEYFDMPLDLKMEKIDKSEYVWVIYISRQHCHFVKTGAHITFKAHSGIEISKWGMRSIFREDLEGLKRKAESEGDFHDTSQHSVAVDDVTNSITNPGPKIQLPYNWLVTEQDEVENIEAKAKENSLSNVGL 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01353 1137 PRINTS Disease resistance protein signature 220 235 - -
Cca04g01353 1137 PRINTS Disease resistance protein signature 296 310 - -
Cca04g01353 1137 PRINTS Disease resistance protein signature 389 403 - -
Cca04g01353 1137 PRINTS Disease resistance protein signature 696 712 - -
Cca04g01353 1137 SUPERFAMILY "Winged helix" DNA-binding domain 424 529 IPR036390 -
Cca04g01353 1137 Gene3D - 16 188 IPR035897 -
Cca04g01353 1137 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 15 627 - -
Cca04g01353 1137 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 627 861 - -
Cca04g01353 1137 SUPERFAMILY L domain-like 553 866 - -
Cca04g01353 1137 Gene3D - 189 351 IPR027417 -
Cca04g01353 1137 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 627 IPR044974 GO:0006952
Cca04g01353 1137 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 627 861 IPR044974 GO:0006952
Cca04g01353 1137 Pfam NB-ARC domain 214 424 IPR002182 GO:0043531
Cca04g01353 1137 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 162 IPR035897 -
Cca04g01353 1137 Gene3D Ribonuclease Inhibitor 786 867 IPR032675 -
Cca04g01353 1137 ProSiteProfiles TIR domain profile. 17 184 IPR000157 GO:0007165
Cca04g01353 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 448 IPR027417 -
Cca04g01353 1137 Gene3D Ribonuclease Inhibitor 547 718 IPR032675 -
Cca04g01353 1137 Gene3D Ribonuclease Inhibitor 719 785 IPR032675 -
Cca04g01353 1137 SMART till_3 18 159 IPR000157 GO:0007165
Cca04g01353 1137 Pfam TIR domain 19 190 IPR000157 GO:0007165
Cca04g01353 1137 Gene3D - 354 438 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01353 Cca-Chr4 17472872 17485790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01353 19 826 WRKY Transcription Factor Family AT4G12020 31.250 7.85e-92 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01353 - - var:108332841 1472.99