Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01351 ATGTTATCAACTTGGTTCTTATTATTCTCGTACACGACTACAACTTCCACTTCAACAGAGATATTAGTAGTGAGTCAATATATCAGCGATGGTCAAACTTTGGTATCAGTAGGTGGAGTTGTTGAAGTGGGTTTCTTCAGTCCAGGAAATTCAACAAGACGATACTTGGGAGTTCTCAAACTCAATGAAAATGGGATTCTTGTGCTTCTCAATGCTACAAACAACACTATTTGGTCTTCCAACATATCAAGCAACGAAGGGAATAATCCAACTGCTCATCTTTTGGATTCCGGAAATTTTGTTGTGAAAAATGGACAAGAAACTAACAGTTTCTTGTGGCAAAGTTTTGATGAAATTGGGGATACAATGATCCCAGGAATGAAGCTTGGATGGAACTTGGAGACTGGTCTAGAAAGATATATATCATCTTGGAATAGTGACAACGATCCTGCTGAGGGAAAATATGCTCTAAAACTTGACCTTAGAGGATATCCTCAAATAATTATATTCAACGGATCTGAGATAAAAGTCAGAATAGGGCCATGGAATGGCCAATCTTGGGCTGGATATCCTGTTACAAGCGATCAGAGTTTGCAAAATTTTGTTTTCAATGAAAAAGAGGTGTATTATGAGTATAAGGTTCTTGACAGTTCGGACTTCAGCATATTTAAACTCACCCCTTCAGGCACTGGGCAGAAAATTGATTGGACAACTCAAACATCCACCAGGCCAGTCCTCTCAACTCAGGAGCAAGATCAATGTGAGAATTATGCCTTTTGTGGTGACAATTCTATATGCAATTATGATGGTAACCATCCAACTTGTGAATGCCTGAGAAGTTATGTTCCCAAGTCTCCTGATCAGTGGAATATGTCAATTTGGATCAATGGTTGTGTTCCAAGGAATAAATCTAGTTGCAATAACAGTTATACCGATGGCTTCTTCAAGTACTCACACATGAAATGGCCGGACACATCTTCATCATGGTTTAGTAAGACCATGGACCTTGATGAATGTGAGAAGTCATGTCTTGAAAACTGTTCTTGTACAGCATATGCCAACTTAGATATCCGTGATGGAGGAAGTGGCTGTTTACTTTGGTTTAATACTCTAGTTGACTTGAGAAATTTTTCTCAATCGGGGCAAGACCTTTATATCAGAGTCCCTGCTTCAGAATTAGATGATGCTGGCCATGGAAACATCAAGAAAAAGATAGTCGGAATCACTGTTGGTGTAACTGTTTCTGGATTAATAATCATATGTGCAGGCATATTTATATATAAAAATCCAGGGGCTGCAAGAAAAATTTACAACAAGCATTACAGAAGTATATTGAAGAAGGAAGACATTGATTTCCCGACTTTTGATTTTTTAGTCTTAGCTAATGCAACTGAAAACTTTTCAACTAAAAACATGCTTGGAGAAGGTGGATTTGGACCAGTATACAAGGGCACATTGATAGATGGGAAAGAGATAGCTGTGAAAAGGCTTTCAAAGAAATCTGAACAGGGGTTGGATGAGTTAAAAAATGAAGTGGCGTTGATTGCAAAACTTCAGCACCGTAATCTTGTAAAACTTCTTGGTTGTTGCATTGAAGGAGAAGAAAAAATGTTGATATATGAATACATGTCCAACGGAAGTTTGGATTACTTTGTTTTTGATGAAACCAAAAGGAAGATCCTAGATTGGCATAAGCGATTCAACATTATTAATGGTATTGCTCGAGGACTTTTGTATCTTCATCAAGATTCAAGGTTGAGGATTATTCACAGAGATCTTAAAACTAGTAATATTTTACTAGATGAAAATTTGGATCCCAAAATTTCAGACTTTGGCTTGGCTCGATCATTTTTGGGAGATCAAGTTGAAGCTAACACAAATAGGGTGGCTGGAACCTATGGTTACATGCCTCCTGAATATGCAACACGTGGACATTTTTCCGTGAAATCAGATGTCTTTAGTTATGGTGTGATAATATTAGAGATTTTAAGTGGAAAGAAAAATAGAGAATTTTCAGACCCAGGACACTACAATAATCTTTTAGGACATGCATGGAGATTATGGACCGAAGAGAGGGCGTTGGATCTACTAGATGATGTGTTGGGACAGCAGTGTGAGCCTTTAGAAGTCTTACGATGCATACAAGTAGGCCTATTATGTGTGCAACAAAGACCAGAAGATAGGCCAGACATGTCAACAGTGGTTTTAATATTGAATGGTGATAAATATTTATTGTCCAAGCCAAAGGTTCCTGGCTTCTACACAGAAACAGATGTTACATCTGAAGTTAATTCTTCACCAGAAAATCACAAACTACGCTCGATTAATGAACTATCCATCACAATGTTAGACGCAAGATAG 2361 0.3782 MLSTWFLLFSYTTTTSTSTEILVVSQYISDGQTLVSVGGVVEVGFFSPGNSTRRYLGVLKLNENGILVLLNATNNTIWSSNISSNEGNNPTAHLLDSGNFVVKNGQETNSFLWQSFDEIGDTMIPGMKLGWNLETGLERYISSWNSDNDPAEGKYALKLDLRGYPQIIIFNGSEIKVRIGPWNGQSWAGYPVTSDQSLQNFVFNEKEVYYEYKVLDSSDFSIFKLTPSGTGQKIDWTTQTSTRPVLSTQEQDQCENYAFCGDNSICNYDGNHPTCECLRSYVPKSPDQWNMSIWINGCVPRNKSSCNNSYTDGFFKYSHMKWPDTSSSWFSKTMDLDECEKSCLENCSCTAYANLDIRDGGSGCLLWFNTLVDLRNFSQSGQDLYIRVPASELDDAGHGNIKKKIVGITVGVTVSGLIIICAGIFIYKNPGAARKIYNKHYRSILKKEDIDFPTFDFLVLANATENFSTKNMLGEGGFGPVYKGTLIDGKEIAVKRLSKKSEQGLDELKNEVALIAKLQHRNLVKLLGCCIEGEEKMLIYEYMSNGSLDYFVFDETKRKILDWHKRFNIINGIARGLLYLHQDSRLRIIHRDLKTSNILLDENLDPKISDFGLARSFLGDQVEANTNRVAGTYGYMPPEYATRGHFSVKSDVFSYGVIILEILSGKKNREFSDPGHYNNLLGHAWRLWTEERALDLLDDVLGQQCEPLEVLRCIQVGLLCVQQRPEDRPDMSTVVLILNGDKYLLSKPKVPGFYTETDVTSEVNSSPENHKLRSINELSITMLDAR 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01351 786 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 784 - -
Cca04g01351 786 ProSiteProfiles Bulb-type lectin domain profile. 1 115 IPR001480 -
Cca04g01351 786 Pfam Protein tyrosine and serine/threonine kinase 469 735 IPR001245 GO:0004672|GO:0006468
Cca04g01351 786 CDD STKc_IRAK 473 740 - -
Cca04g01351 786 Gene3D - 14 116 IPR036426 -
Cca04g01351 786 SMART blect_4 25 119 IPR001480 -
Cca04g01351 786 SMART serkin_6 467 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01351 786 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 18 784 - -
Cca04g01351 786 CDD B_lectin 25 117 IPR001480 -
Cca04g01351 786 PIRSF SRK 1 62 IPR024171 GO:0004674
Cca04g01351 786 PIRSF SRK 58 786 IPR024171 GO:0004674
Cca04g01351 786 ProSiteProfiles PAN/Apple domain profile. 306 389 IPR003609 -
Cca04g01351 786 Gene3D Hepatocyte Growth Factor 306 386 - -
Cca04g01351 786 SUPERFAMILY alpha-D-mannose-specific plant lectins 47 150 IPR036426 -
Cca04g01351 786 Pfam S-locus glycoprotein domain 178 285 IPR000858 GO:0048544
Cca04g01351 786 Gene3D Transferase(Phosphotransferase) domain 1 543 746 - -
Cca04g01351 786 SUPERFAMILY Protein kinase-like (PK-like) 451 738 IPR011009 -
Cca04g01351 786 Gene3D Phosphorylase Kinase; domain 1 441 542 - -
Cca04g01351 786 ProSiteProfiles Protein kinase domain profile. 467 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01351 786 ProSitePatterns Serine/Threonine protein kinases active-site signature. 588 600 IPR008271 GO:0004672|GO:0006468
Cca04g01351 786 CDD PAN_AP_plant 303 389 - -
Cca04g01351 786 Pfam PAN-like domain 306 374 IPR003609 -
Cca04g01351 786 Pfam D-mannose binding lectin 57 144 IPR001480 -
Cca04g01351 786 SMART ntp_6 309 388 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01351 Cca-Chr4 17446460 17450198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01351 405 754 Receptor kinase-like Gene Family AT4G23190 50.708 4.49e-122 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01351 PK_Tyr_Ser-Thr 7.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01351 - - gmx:100815430 1215.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01351 04 17446460 17450198 Cca04g01351 04 17446460 17450198 ECH