Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01346 ATGAGGAAATTCTCTCAATGGGGACAAGACTTGTATGTCAGAGTCCCTGCTTCAGAATTAGTCCTTGCTAAGGCCACCGGAAACTTTTCCACTGAAAACAAGATTGGAGAAGGTGGCTTTGGACCAGTACACAAGGGCACATTGATTGATGGGAAAGAGATAGCTGTGAAAAGACTTTCAAAGAATTCTGAACAAGGATTATATGAGTTTAAAAATGAAGTGGCATTGATAGCAAAACTTCAGCACCATCAAGTTGAGGCAAACATAAATAGAGTGGCTGGAACATATGGTTACATACCTCCAGAATATGTTGCTCGTGGACATTTCTATGTTAAATCAAATGTTTTTAGTTATGGTGTGATAATATTAGAGATTGCATGGAGATTTTGGAATGAAGAGAGGGCCCTGAAACTACTGGATAATGCGATAGCAGAACAATACACACCCTCTAAAGTCATACGATGCATACAAGTAGGTCTATTATGCGTGCAACAAAGGCCAGAAGATAGGCCAGACATGTCATCAGTAGTTTTAATGTTGAATGGTGATAAATTATTGCCTAAGCCTAAGGTTCCTGGTTTTTACACTGAAATAGATATTATAATAGATGCAAGCTCTTCATCGACAAATCACAAACCGTACTCAATTAATGAACTTTCCATCACAATGTTAGAAGCAAGATAG 684 0.3816 MRKFSQWGQDLYVRVPASELVLAKATGNFSTENKIGEGGFGPVHKGTLIDGKEIAVKRLSKNSEQGLYEFKNEVALIAKLQHHQVEANINRVAGTYGYIPPEYVARGHFYVKSNVFSYGVIILEIAWRFWNEERALKLLDNAIAEQYTPSKVIRCIQVGLLCVQQRPEDRPDMSSVVLMLNGDKLLPKPKVPGFYTEIDIIIDASSSSTNHKPYSINELSITMLEAR 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01346 227 ProSiteProfiles Protein kinase domain profile. 1 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01346 227 Pfam Protein tyrosine and serine/threonine kinase 97 178 IPR001245 GO:0004672|GO:0006468
Cca04g01346 227 Pfam Protein tyrosine and serine/threonine kinase 31 85 IPR001245 GO:0004672|GO:0006468
Cca04g01346 227 SMART tyrkin_6 29 180 IPR020635 GO:0004713|GO:0006468
Cca04g01346 227 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 83 - -
Cca04g01346 227 Gene3D Phosphorylase Kinase; domain 1 4 85 - -
Cca04g01346 227 SUPERFAMILY Protein kinase-like (PK-like) 21 200 IPR011009 -
Cca04g01346 227 Gene3D Transferase(Phosphotransferase) domain 1 86 186 - -
Cca04g01346 227 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 84 225 - -
Cca04g01346 227 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 21 83 - -
Cca04g01346 227 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 84 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01346 Cca-Chr4 17371957 17373914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01346 21 227 Receptor kinase-like Gene Family AT4G23280 31.673 2.55e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01346 PK_Tyr_Ser-Thr 5.7e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01346 - - gmx:100776042 216.853