Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01345 ATGCTGTTTATCTTGCTGTTCTTATTCTCATACATGACTACAACTTCAATTTCATCAGACACTTTAGCAGTGAGTCAATCTATCAGAGATGGTGAGACTTTGGTTTCTAAAGGTGGAATTATTGAAGTGGGTTTCTTTAGTCCAGGAAGTTCAACAAGACGATACTTGGGGATATGGTACACAAATGCATCCCCTTTGACAGTGGTGTGGGTGGCCAACAGAAATAACCCTCTTGAGAATAACTCAGGAATTCTCAAACTCAATGAAAAAGGGATTCTTGTGCTTCTCGATGGCACAAACAGCACCATTTGGTCATCCAATATATCCACCAAAGCTGTGAATGATCCAATTGCTAATCTCTTGGATTCGGGAAACTTTATAGTGAAAAGTGGACAGGAAACTAACGAGGGCAACATCTTGTGGCAGAGTTTTGATTATATGGGTGATACATGGATGCCAGAAATGAAACTTGGATGGAACTTAGAGACTGGTCTAGAAAGATATTTATCATCATGGAAAAGTGAAGATGATCCTGCTGAGGGAGAATATTCCCTAAAACTTGACCTAAGAGGATATCCTCAAATAATCATATTCAAGGGACATGATATAGAAAAGAGACTAGGGTCATGGAATGGCTTGTCTCTAGTTGCAAATCCAGGTCCAAGTTTTGCAACGACACCAAATTTTGTGTTAAATGAAAGAGAAGTGTATTATGATTACCGTCGTCTCGATAGCTCGGTCTTCTTTGTGTATATCCTGACCCCATCAGGCATAGGGCAGAGTTTTTCTTGGACAACTCAAACAAGCACCAGGCATGTTGTCTCAACTGGGGAGCAAGATCAATGCGAAAATTATGCCTTTTGTGGTGCAAATTCTTTATGCAATTATGATGGTAACCAACCAAATTGTGAATGCCTGAGAGGTTATGTTCCAAAGTCTCCTGATCAGTGGAATATATCAATTTGGCTCAATGGTTGTGTTCCAAAGAATAAATCTACATGCATAAACAGTTATACAGATGGGTTCTTGAAATACAAATACATGAAATTACCGGACACATCTTCATCATGGTTTAGTTCAACCTTGAACCTTGATGAATGTCGTAAGTCATGTCTTAAAAACTGTTCTTGTACAGCATATGCCAATTTAGATATCCGTGATGGAGGAAGTGGCTGTCTACTTTGGTTTAATAATCTAGTCGACTTGAGGAATTTCTCTCAATGGGGACAAGACTTGTATGTCAGAGTCCCTGCTTCAGAATTAGATCAAGCTGGCCACGGAAGCAACATAAAGAAGATAGTAGGAGTCGTTGTTGGTGTCACTATTTTTGGATTAATTGCCACATGTTTATGCGTATTTATTATTAGACATCCAGGGGCTGCAAGAAAATTTTGCAACAAGAATTACAAAAATATACCGAGAGCGGAAGATATGGATTTGCCAACTTTCAATTTTTCAGTCATAGCTAAGGCCACCGAAAACTTTTCAACTGAAAACAAGATTGGAGAAGGTGGCTTTGGACCAGTACACAAGGGCACACTGATAGATGGGAAAGAGATAGCTGTGAAAAGGCTTTCAAAGAACTCTGGACAAGGGTTGAATGAGTTCAAAACTGAAGTGGCATTGATTGCCAAACTTCAGCACCGTAATCTTGTAAAGCTTCTTGGTTGCTGCATTGATGGAGAAGAAAAGATGTTAATTTATGAATACATGCCCAACAACAGCTTGGACTACTTTGTTTTTGATGAAACCAAAAGAAAGTTCCTAGCTTGGAGTAAACGTTTCAACATTATTAGTGGCATCGCTCGAGGACTTCTATATCTTCATCAGGACTCTACGCTGAGGATTATTCACAGAGATCTAAAAACTAGCAATATTTTACTAGATGCAAATTTGAATCCTAAAATATCAGATTTTGGCTTGGCTCGATTATTGTTGGGAGATCAAGTAGAGGCAAACACAAATAGGGTGGCTGGAACATATGGTTACATACCCCCCGAATATGCTGCGCGTGGACATTTCTCAGTGAAATCAGATGTTTTCAGTTACGGTGTGATAGTGCTAGAGATTGTAAGTGGAAAGAAAAATAGAGAATTTTCAGACCCAGAACACGACAATAATCTTCTTGGATATGCATGGAGATTTTGGACTGAAGAGAGGGCCCTGGAATTACTGGATGAACTATTAGCAGAACAGTGCACGCCCTCTGAAGTCATAAGATGCATACAGGTAGGTCTATTATGCGTGCAACAAAGACCGGAAGATAGGCCAGACATGTCGTCAGTGATTTTAATGTTGAATGGTGATAAACTATTGCCAAAGCCCAAGGTTCCTGGTTTTTACACTGCAATAGATATTTCAACTGATGCAAGTTCTCCATCGGCAAATCACAAACCGTACTCGGTGAATGAACTTTCCATCACAATATTAGATGCAAGATAA 2442 0.3943 MLFILLFLFSYMTTTSISSDTLAVSQSIRDGETLVSKGGIIEVGFFSPGSSTRRYLGIWYTNASPLTVVWVANRNNPLENNSGILKLNEKGILVLLDGTNSTIWSSNISTKAVNDPIANLLDSGNFIVKSGQETNEGNILWQSFDYMGDTWMPEMKLGWNLETGLERYLSSWKSEDDPAEGEYSLKLDLRGYPQIIIFKGHDIEKRLGSWNGLSLVANPGPSFATTPNFVLNEREVYYDYRRLDSSVFFVYILTPSGIGQSFSWTTQTSTRHVVSTGEQDQCENYAFCGANSLCNYDGNQPNCECLRGYVPKSPDQWNISIWLNGCVPKNKSTCINSYTDGFLKYKYMKLPDTSSSWFSSTLNLDECRKSCLKNCSCTAYANLDIRDGGSGCLLWFNNLVDLRNFSQWGQDLYVRVPASELDQAGHGSNIKKIVGVVVGVTIFGLIATCLCVFIIRHPGAARKFCNKNYKNIPRAEDMDLPTFNFSVIAKATENFSTENKIGEGGFGPVHKGTLIDGKEIAVKRLSKNSGQGLNEFKTEVALIAKLQHRNLVKLLGCCIDGEEKMLIYEYMPNNSLDYFVFDETKRKFLAWSKRFNIISGIARGLLYLHQDSTLRIIHRDLKTSNILLDANLNPKISDFGLARLLLGDQVEANTNRVAGTYGYIPPEYAARGHFSVKSDVFSYGVIVLEIVSGKKNREFSDPEHDNNLLGYAWRFWTEERALELLDELLAEQCTPSEVIRCIQVGLLCVQQRPEDRPDMSSVILMLNGDKLLPKPKVPGFYTAIDISTDASSPSANHKPYSVNELSITILDAR 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01345 813 PIRSF SRK 1 813 IPR024171 GO:0004674
Cca04g01345 813 CDD B_lectin 25 146 IPR001480 -
Cca04g01345 813 SMART serkin_6 495 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01345 813 Gene3D Phosphorylase Kinase; domain 1 469 570 - -
Cca04g01345 813 Pfam Protein tyrosine and serine/threonine kinase 497 764 IPR001245 GO:0004672|GO:0006468
Cca04g01345 813 ProSiteProfiles PAN/Apple domain profile. 334 417 IPR003609 -
Cca04g01345 813 CDD STKc_IRAK 501 768 - -
Cca04g01345 813 Gene3D - 13 144 IPR036426 -
Cca04g01345 813 Gene3D Transferase(Phosphotransferase) domain 1 571 772 - -
Cca04g01345 813 CDD PAN_AP_plant 336 417 - -
Cca04g01345 813 ProSiteProfiles Protein kinase domain profile. 495 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01345 813 Pfam D-mannose binding lectin 67 173 IPR001480 -
Cca04g01345 813 SUPERFAMILY Protein kinase-like (PK-like) 480 790 IPR011009 -
Cca04g01345 813 Pfam PAN-like domain 334 402 IPR003609 -
Cca04g01345 813 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 810 - -
Cca04g01345 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 178 IPR036426 -
Cca04g01345 813 Pfam S-locus glycoprotein domain 206 313 IPR000858 GO:0048544
Cca04g01345 813 Gene3D Hepatocyte Growth Factor 333 413 - -
Cca04g01345 813 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 15 810 - -
Cca04g01345 813 SMART blect_4 25 147 IPR001480 -
Cca04g01345 813 ProSiteProfiles Bulb-type lectin domain profile. 19 141 IPR001480 -
Cca04g01345 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Cca04g01345 813 ProSiteProfiles EGF-like domain profile. 278 315 IPR000742 -
Cca04g01345 813 SMART ntp_6 337 416 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01345 Cca-Chr4 17360250 17363979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01345 483 813 Receptor kinase-like Gene Family AT4G23140 55.263 3.30e-125 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01345 PK_Tyr_Ser-Thr 3.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01345 - - gmx:100815430 1313.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01345 04 17360250 17363979 Cca10g01034 10 12641196 12644863 PCT