Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01344 ATGGTTGATCACATCATAGTGTTATTCTTGTGGTTCCTTATACTCTCCTATACAAGAACATGCACTTCACTAAGCAGTTTAGCAGTGAATGAATCTATCCGAGATGGTGAGAGTTTAGTTTCAGCAGATGGAACATTTGAAGTGGGTTTCTTCAGTCCCGGAAATTCAACTGGTCGTTATTTGGGTGTTTGGTACAGAAATTTATCTCCTTTAACTGTGGTGTGGGTGGCCAACCGTGGAACGCCACTGCAGAATGATTCAGGAGTTTTCAAACTCAATGAAGATGGGGTTCTTTTGATTCTCAGTGGAACAAACAGGAGTATCTGGTCGTCGAATGTATCGAATAAAACAATGAATAACCCAATTGTGAAGCTCATGGACTCGGGCAATCTTGTGTTAAAGAATGAACATGATGATAACAGCATGGAGGACAAATTTCTGTGGCAGAGTTTTGATTATCCGTGTGATTTGCACTTGCCAGGAATGAAGTTTGGATGGAACAAACTAACTGGTATAAACAGGGTTTTGACACCTTGGAAAAGTGAAGATGATCCGGCAATGGGAGAGTTCTCTGCAAAGATTGACATTAGAGGATGTCCACAACTACTTTTTATGAAAGGAGCTGATATAAAATTTAGAATAGGATCATGGAATGGCATTGGTTACACTGGATATCCAGCTCAGCAGTTGAAGCAAATACAAAGATTTGAATTTGTCTTCAATGCAGAAGAAGTGTATTTTAAGTATGAAGTCATTAATAGATCAATTGTCTCCATGTATAGATTGAGTCCTTCTGGCATTTTTCAAGGTTTAGTTTGGACAAATGAAACAAGCGGTCGTAAAGTTATCACCCCAGGTGGGGTAGACTTGTGCGATAATTATGCATTTTGTGGTGTGAATTCTGTGTGCAGAATGGATGGTAATGCTCCGAGATGTGAATGCTTGAAAGGATATTACACAAACATGAAATTGCCAGACACATCTTCATCATGGTATAGTAAAACCATGAACCTTGAGGAATGTCAGAAAAAATGTCTGGAGGACTGTTCATGTACAGCATACACAAATTTGGACATCCGTCACGGAGGAAGTGGCTGTTTGCTTTGGCATGATGATCTGGTTGACATGAGGAAATTCTCTCAGTTGGGGCAAGAGCTTTATATCAGAGTCCCAACTTCAGAACTTGGTATGCAACTGGAAATAAATAAAACAATGACACTAGTCATATTGATTAATACTGACATCGTCATCTTGCACATTTTAGTGGCAAGAAGACAATATCTTCATATCTCACTATTCCAACGGCGGCAAGAATATTTTAGCTTGAGGAAGGAAGACATGGAGCTTACAAAATTTGATTGGTCAATCATTGCTAAAGCCACTAATAACTTTTCTAGCAGAAATAAACTAGGGGAGGGTGGATTTGGGCCAGTCTACAAGGGTACACTCATAGATGGGCAAGAGGTAGCCATTAAACGGCACTCAAAGATGTCTGATCAAGGGCTGGAGGAATTTAAAAATGAAATTATGTTGATCGCAAAGCTTCAGCACCGAAATCTTGTGAAACTTCTAGGTTGCTGCATTCAAGGAGAGGAAAAATTGTTGATCTATGAATACATGCCCAACAAGAGCTTAGACTACTTCATCTTTGATGAAGCTAGAAGCAAGCTCTTAGCCTGGCATCAACGTTTTCGCATTATTATTGGCATTGCTCGAGGGCTTCTCTATCTTCACCAAGACTCCAGACTCAAAATTATTCACAGAGATTTAAAAGCAAGCAATATCCTTCTAGATGCACATATGAATCCTAAAATCTCGGACTTTGGATTGGCTCGGATGTTTGGCGGTGATCAAATTGAAGCCAAAACCAGAAAAGTGGTTGGAACATATGGTTACATGCCTCCAGAATATGCTGTGCATGGTCATTACTCAGCAAAATCAGATGTCTTCGGCTTCGGTGTGATAGTATTAGAGATTGTTACTGGAAACAAGAACAGGGGATTTTCTGATCCAGAACACTCTCTTAACCTTCTTGGACATGCATGGAGACATTGGAGTGAAGAAAGACCATTGGAACTGATAGATGCACACTTACGTGAAAGATGCATTCCTTTTGAAGTCTTAAGATGCATACATGTGGGTTTGTTGTGTGTACAACAGAAACCTGAAGATAGGCCAGACATGTCTTCTGTGATTTCTATGCTGAATGGTGAGAAATTATTGCCCCAGCCTAAAGCTCCGGGATTTTACACAGGAATGTTTACTGAATCTGTATCTTCATTAAGAACATGCAATCTTTTATCAACAAATGAGATGTCCCTTACAATTTTTGAGGCAAGATAG 2343 0.3969 MVDHIIVLFLWFLILSYTRTCTSLSSLAVNESIRDGESLVSADGTFEVGFFSPGNSTGRYLGVWYRNLSPLTVVWVANRGTPLQNDSGVFKLNEDGVLLILSGTNRSIWSSNVSNKTMNNPIVKLMDSGNLVLKNEHDDNSMEDKFLWQSFDYPCDLHLPGMKFGWNKLTGINRVLTPWKSEDDPAMGEFSAKIDIRGCPQLLFMKGADIKFRIGSWNGIGYTGYPAQQLKQIQRFEFVFNAEEVYFKYEVINRSIVSMYRLSPSGIFQGLVWTNETSGRKVITPGGVDLCDNYAFCGVNSVCRMDGNAPRCECLKGYYTNMKLPDTSSSWYSKTMNLEECQKKCLEDCSCTAYTNLDIRHGGSGCLLWHDDLVDMRKFSQLGQELYIRVPTSELGMQLEINKTMTLVILINTDIVILHILVARRQYLHISLFQRRQEYFSLRKEDMELTKFDWSIIAKATNNFSSRNKLGEGGFGPVYKGTLIDGQEVAIKRHSKMSDQGLEEFKNEIMLIAKLQHRNLVKLLGCCIQGEEKLLIYEYMPNKSLDYFIFDEARSKLLAWHQRFRIIIGIARGLLYLHQDSRLKIIHRDLKASNILLDAHMNPKISDFGLARMFGGDQIEAKTRKVVGTYGYMPPEYAVHGHYSAKSDVFGFGVIVLEIVTGNKNRGFSDPEHSLNLLGHAWRHWSEERPLELIDAHLRERCIPFEVLRCIHVGLLCVQQKPEDRPDMSSVISMLNGEKLLPQPKAPGFYTGMFTESVSSLRTCNLLSTNEMSLTIFEAR 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01344 780 ProSiteProfiles Bulb-type lectin domain profile. 24 146 IPR001480 -
Cca04g01344 780 Pfam Protein tyrosine and serine/threonine kinase 467 735 IPR001245 GO:0004672|GO:0006468
Cca04g01344 780 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 185 IPR036426 -
Cca04g01344 780 CDD STKc_IRAK 470 737 - -
Cca04g01344 780 PIRSF SRK 318 780 IPR024171 GO:0004674
Cca04g01344 780 PIRSF SRK 1 322 IPR024171 GO:0004674
Cca04g01344 780 SMART blect_4 30 154 IPR001480 -
Cca04g01344 780 ProSiteProfiles Protein kinase domain profile. 464 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01344 780 Pfam S-locus glycoprotein domain 212 319 IPR000858 GO:0048544
Cca04g01344 780 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 319 778 - -
Cca04g01344 780 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 16 318 - -
Cca04g01344 780 SMART ntp_6 316 390 IPR003609 -
Cca04g01344 780 Gene3D - 20 151 IPR036426 -
Cca04g01344 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 585 597 IPR008271 GO:0004672|GO:0006468
Cca04g01344 780 CDD PAN_AP_plant 321 391 - -
Cca04g01344 780 SMART serkin_6 464 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01344 780 Gene3D Phosphorylase Kinase; domain 1 428 539 - -
Cca04g01344 780 Pfam D-mannose binding lectin 72 180 IPR001480 -
Cca04g01344 780 Gene3D Transferase(Phosphotransferase) domain 1 540 742 - -
Cca04g01344 780 CDD B_lectin 30 154 IPR001480 -
Cca04g01344 780 Pfam PAN-like domain 321 376 IPR003609 -
Cca04g01344 780 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 319 778 - -
Cca04g01344 780 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 318 - -
Cca04g01344 780 Gene3D Hepatocyte Growth Factor 308 387 - -
Cca04g01344 780 SUPERFAMILY Protein kinase-like (PK-like) 441 735 IPR011009 -
Cca04g01344 780 ProSiteProfiles PAN/Apple domain profile. 314 391 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01344 Cca-Chr4 17354374 17358517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01344 390 749 Receptor kinase-like Gene Family AT4G05200 52.304 8.88e-127 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01344 PK_Tyr_Ser-Thr 6.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01344 - - aprc:113865090 1113.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01344 04 17354374 17358517 Cca04g01344 04 17354374 17358517 ECH