Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01341 ATGTTATGTATTTGGTTCTTCTTATTCTCAATTATGTCTGGAACTTCCAACTCACTAGACACTTTAGCAGCGAGTCAATCCATTCGAGATGGTGAGACTTTGGTTTCAGCAAGTGGAATTATTGAAGTGGGTTTCTTCAGTCCAGGAAATTCAACAAGAAGATACTTGGGTATATGGTACACAAATGTATCCCCTTTCACTGTGGTGTGGGTGGCCAACAGAAATACACCTCTTGAGGATAACTCAGGAGTTCTCAAACTCAATGAAAAAGGGATTCTTGTTCTTCTCAATGGCACAAGCACCACCATTTGGTCATCCAACATATCAAGCAAAGCAGTGAATAATCCAACTGCTCATCTTTTGGATTCCGGAAATTTTGTTGTGAAAAATGGACAAGAAACCAACGAGGATGGTGTCTTGTGGCAGAGTTTTGATTATCCAGGTGATGCATTGATTCCCGGAATGAAAGTTGGATGGAACTTGGAGACTGGTCTACAAAGATATTTATCGTCTTGGAGAAGTGTTGACGATCCTGCTGAGGGAGAGTATGCAGCAAAAATTGATCTCAGAGGATACCCTCAATTATTTAAATTCAAGGGATCTCAAATAAAATCGAGAAGAGGGTCATGGAATGGCTTGTCCCTAGTTGCAAATCCAGTTACGAGTCCTGAAATATCACAAAAATTTGTGATGAATGAAAAAGAGGTGTATTATGAGTACGACCTTGCTCTTCCATCGATCTTCCTCTTATATAAACTGACTCCTTCAGGCGCAGGGCAGAGTTGTTATTGGACAACCCAAGGAAGAACCTTGCAAGTCGTCTCAACCGGGGAGCAAGATCAATGCGAGAATTATGCCTTCTGTGGTTCAAATTCTATATGCAGTTCAGATGGTAACCAAGCAACTTGTGAATGCCTGCGAGGTTATGTTCCCAAGTCACCCGATCAATGGAATATGGTAGTTTGGATTGAAGGTTGCGTTCCAAGGAACAAATCTAATTGCAATAACAGTTATACAGATGGCTTCTTGACATACACACACCTGAAATTGCCAGACACGTCTTCATCATGGTTTAATAGAACCATGAACCTTGATGAATGTCGGAAGTCATGTCTTAAAAACTGTTCTTGTACAGCATATGCAAATTTAGATATTCGAGATGGAGGAAATGGCTGTCTGCTTTGGTTTAATAATCTAGTTGACATGAGGAAATTCTCCCAATGGGGACAAGATTTGTATATCAGAGTCCCTGCTTCAGAATTAGATCATGTTGGCCATGGAAACATCAAGAAAAAGACGGTAGAAATCGCAGTTGGTTTGATTATTTTTGGATTAGTCATATGTGCATGCATATATATAATAAAAAATCCAGGTACAGCAAGAAAACTTTACAACAAGCATTACAAAATTAAACAGAGAAAAGAAGATGCTGATTTGCCAACTTTTCATTTGTCAGTCTTAGCAAATGCTACTGAAAACTTTTCATCCAAAAACAAGCTTGGAGAAGGTGGTTATGGACCCGTATACAAGGGCAAACTGATAGATGGACAAGAGTTCGCTGTCAAGAGGCTTTCAAAGAAATCTGGACAAGGGTTAGAAGAGTTCAAAAATGAAGTAGCATTGATTGCAAAACTTCAGCATCGTAATCTTGTAAAACTTCTAGGTTGCTGCATCGAAGGAGAAGAAAAAATGTTAATTTATGAATACATGCCCAACCACAGTTTGGATTACTTTGTTTTTGATGAAACCAAAAGGAAGTTATTAGATTGGTGTAAGCGTTTCAACATTATTAGTGGCATTGCCAGAGGACTCCTGTATCTTCATCAAGACTCTAGATTGAGGATTATTCATAGAGACCTAAAAACAAGTAATATTTTATTGGATGCTAATTTGGATCCTAAAATATCAGACTTTGGCTTGGCTCGATCATTTTTGGGAGATCAAGTTGAGGCAAACACCAATAGGGTGGCTGGAACATATGGTTATATGCCGCCCGAGTATGCTACACGTGGACACTTCTCAGTAAAATCAGATGTATTTAGTTATGGTGTGATAATCCTAGAGATTGTAAGTGGGAAGAAAAACAGAGAATTTTCAAACCCAAAACACTACAATAATCTTCTTGGACATGCATGGACGTTATGGACTGAAAAGAGGGCACTCGAACTACTGGATGAAGTGTTAGGAGAACAATTCATGCCCTCTGAAGTCATTCGATGCATACAGGTTAAACAAAGCAAAACGGAAGTACTAACATGGTACACAAAGGTATCCCCTTTAACAGTGGTGTGGGTGGCTAACCGAAATAAACCTCTTGATGATAAATCAGGACTTCTCAAACTCAATGAAAATGGGATTCATGTGCTTCTCAATGCTACAAACAACACTATTTGGTCTTCCAACATATCAAGCAACGAAGGGAATAATCCAACTGCTCATCTTTTGGATTCCGGAAATTTTGTTGTGAAAAATGGACAAGAAACTAACAGTTTCTTGTGGCAAAGTTTTGATGAAATTGGGGATACAATGATCCCAGGAATGAAGCTTGGATGGAACTTGGAGACTGGTCTAGAAAGATATATATCATCTTGGAATAGTGACAACGATCCTGCTGAGGGAAAATATGCTTTAAAACTTGACCTTAGAGGATATCCTGAAATAATTATATTCAAGGGACCTGATATAAAATCGAGAAAAGGGTCATGGAATGGCTTGTCTGTAGTTGCAAAACCAACTACGGTTCCTGAAATATCACAAAACTTTGTCATCAATGAAAAAGAGGTGTATTATGAGTACGACCTTGTTGTTCCATCGATCTTCAGGGTACATAAACTGACTCCTTCAGGCACAGTGCAGAGTTTGTATTGGACAACTCAAAGAAGAACCTTGCAAGTCACCTCAACTGGGGAGGAAGATCAGTGCGAGAATTATGCCTTTTGTGGTTCAAATTCTATATGCAGTTCAGATGGTAACCGAGCAACTTGTGAATGCCTGCGAGGTTATGTTCCAAAGTCACCCGATCAATGGAATATAGCAGTTTGGTTTGAAGATTGCGTTTCAAGGAACAAATCTAATTGCAATAACAGTTATACAGATGGCTTCTTGACATACACACACCTGAAATTGCCAGACACGTCTTCATCATGGTTTAATAGAACCATGAACCTTGATGAATGTCGGAAGTCATGTCTTAAAAACTGTTCTTGTAAAGCTCGAATGCTCTCGAATCTTAACTCGGCCCTGTCTCGAGTACCCCCTCTTAGGACTAGTTATAAGTCTTCCATGGTTAATCCACCGTTTTCACTATTTGCTTTCTTCACGCTCAAGCcttctacttcttcttcttcggtgctccttcgctttcttctaacgtccatggcttcctctgctgcttcaacttctGCCGCCGTAGCTTCAACGGTGTCCCCTACTACTGGGTCATCCCCAGTTTTGTCTACAACAATGGCTTCTGCTGCTACTACCACCACTGCTGCAGCCACTTCTACTCAGGCAGGAACAttactgatgactaacgccccaatgcacaccattcctgaaggcaatgagacctttgtgcctatccctggcatggaagaagccagtctcaagatttacaattctcagGTCTCCAAAACAAGTCACATTTTGTTCATCATGGACATGAAGAAGGTCACCTGTGTCGTCCTCATGGCTGCTGCCTCCGTGAGTGCTGCAGTGGCTGCCGTTGAGGTTCCTGCCCCAGCCCCTGGCCCAAGCAGTGGAGCCTCAGCTACCTTGCCCCTTGTTGGCTCCTTGGTTGGTGCCTCTGTCTTGTCTTTCTTTGCCTTGTTCCACTAA 3837 0.3878 MLCIWFFLFSIMSGTSNSLDTLAASQSIRDGETLVSASGIIEVGFFSPGNSTRRYLGIWYTNVSPFTVVWVANRNTPLEDNSGVLKLNEKGILVLLNGTSTTIWSSNISSKAVNNPTAHLLDSGNFVVKNGQETNEDGVLWQSFDYPGDALIPGMKVGWNLETGLQRYLSSWRSVDDPAEGEYAAKIDLRGYPQLFKFKGSQIKSRRGSWNGLSLVANPVTSPEISQKFVMNEKEVYYEYDLALPSIFLLYKLTPSGAGQSCYWTTQGRTLQVVSTGEQDQCENYAFCGSNSICSSDGNQATCECLRGYVPKSPDQWNMVVWIEGCVPRNKSNCNNSYTDGFLTYTHLKLPDTSSSWFNRTMNLDECRKSCLKNCSCTAYANLDIRDGGNGCLLWFNNLVDMRKFSQWGQDLYIRVPASELDHVGHGNIKKKTVEIAVGLIIFGLVICACIYIIKNPGTARKLYNKHYKIKQRKEDADLPTFHLSVLANATENFSSKNKLGEGGYGPVYKGKLIDGQEFAVKRLSKKSGQGLEEFKNEVALIAKLQHRNLVKLLGCCIEGEEKMLIYEYMPNHSLDYFVFDETKRKLLDWCKRFNIISGIARGLLYLHQDSRLRIIHRDLKTSNILLDANLDPKISDFGLARSFLGDQVEANTNRVAGTYGYMPPEYATRGHFSVKSDVFSYGVIILEIVSGKKNREFSNPKHYNNLLGHAWTLWTEKRALELLDEVLGEQFMPSEVIRCIQVKQSKTEVLTWYTKVSPLTVVWVANRNKPLDDKSGLLKLNENGIHVLLNATNNTIWSSNISSNEGNNPTAHLLDSGNFVVKNGQETNSFLWQSFDEIGDTMIPGMKLGWNLETGLERYISSWNSDNDPAEGKYALKLDLRGYPEIIIFKGPDIKSRKGSWNGLSVVAKPTTVPEISQNFVINEKEVYYEYDLVVPSIFRVHKLTPSGTVQSLYWTTQRRTLQVTSTGEEDQCENYAFCGSNSICSSDGNRATCECLRGYVPKSPDQWNIAVWFEDCVSRNKSNCNNSYTDGFLTYTHLKLPDTSSSWFNRTMNLDECRKSCLKNCSCKARMLSNLNSALSRVPPLRTSYKSSMVNPPFSLFAFFTLKPSTSSSSVLLRFLLTSMASSAASTSAAVASTVSPTTGSSPVLSTTMASAATTTTAAATSTQAGTLLMTNAPMHTIPEGNETFVPIPGMEEASLKIYNSQVSKTSHILFIMDMKKVTCVVLMAAASVSAAVAAVEVPAPAPGPSSGASATLPLVGSLVGASVLSFFALFH 1278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01341 1278 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Cca04g01341 1278 Pfam Protein kinase domain 495 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01341 1278 ProSiteProfiles PAN/Apple domain profile. 1026 1107 IPR003609 -
Cca04g01341 1278 CDD PAN_AP_plant 1023 1071 - -
Cca04g01341 1278 Gene3D Hepatocyte Growth Factor 333 413 - -
Cca04g01341 1278 Pfam D-mannose binding lectin 67 173 IPR001480 -
Cca04g01341 1278 Pfam D-mannose binding lectin 761 864 IPR001480 -
Cca04g01341 1278 Pfam S-locus glycoprotein domain 898 1005 IPR000858 GO:0048544
Cca04g01341 1278 Pfam S-locus glycoprotein domain 206 313 IPR000858 GO:0048544
Cca04g01341 1278 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 752 1078 - -
Cca04g01341 1278 CDD B_lectin 25 147 IPR001480 -
Cca04g01341 1278 Gene3D Phosphorylase Kinase; domain 1 467 569 - -
Cca04g01341 1278 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 752 1078 - -
Cca04g01341 1278 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 744 - -
Cca04g01341 1278 SMART serkin_6 494 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01341 1278 SUPERFAMILY Protein kinase-like (PK-like) 479 742 IPR011009 -
Cca04g01341 1278 Gene3D - 14 144 IPR036426 -
Cca04g01341 1278 ProSiteProfiles Protein kinase domain profile. 494 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01341 1278 SMART blect_4 719 839 IPR001480 -
Cca04g01341 1278 SMART blect_4 25 147 IPR001480 -
Cca04g01341 1278 CDD PAN_AP_plant 331 417 - -
Cca04g01341 1278 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 14 744 - -
Cca04g01341 1278 SUPERFAMILY alpha-D-mannose-specific plant lectins 759 870 IPR036426 -
Cca04g01341 1278 Gene3D Transferase(Phosphotransferase) domain 1 570 750 - -
Cca04g01341 1278 ProSiteProfiles PAN/Apple domain profile. 334 417 IPR003609 -
Cca04g01341 1278 CDD B_lectin 750 837 IPR001480 -
Cca04g01341 1278 ProSiteProfiles Bulb-type lectin domain profile. 19 141 IPR001480 -
Cca04g01341 1278 Gene3D - 751 871 - -
Cca04g01341 1278 Pfam PAN-like domain 1026 1071 IPR003609 -
Cca04g01341 1278 Pfam PAN-like domain 334 402 IPR003609 -
Cca04g01341 1278 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 178 IPR036426 -
Cca04g01341 1278 ProSiteProfiles Bulb-type lectin domain profile. 717 835 IPR001480 -
Cca04g01341 1278 ProSiteProfiles EGF-like domain profile. 278 315 IPR000742 -
Cca04g01341 1278 ProSiteProfiles EGF-like domain profile. 970 1007 IPR000742 -
Cca04g01341 1278 SMART ntp_6 337 416 IPR003609 -
Cca04g01341 1278 SMART ntp_6 1029 1098 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01341 Cca-Chr4 17299033 17312903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01341 466 743 Receptor kinase-like Gene Family AT4G11530 59.155 2.28e-109 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01341 Pkinase 9.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01341 - - gmx:100776576 1241.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01341 04 17299033 17312903 Cca04g01341 04 17299033 17312903 ECH