Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01338 ATGTTATTCATTTGGTTCTTATTATTCTCCTACATGGTTACAACTTCAACTTCACTAGACAGTTTAGCAATGGGTCAATCTATCAGAGAAGGTGATACTTTGGTTTCAGCAGGTGGAATTATTGAAGTGGGTTTCTTCAGTCCAGGAAATTCAACAAGAAGATACTTGGGTATATGGTACACAAATGTTTCCCCTTTCACTGTGGTTTGGGTGGCTAACCGAAACACACCTCTTGAGAATAAATCAGGAGTTCTCAAACTCAACGAAAGAGGGATTCTTGTGCTTCTCAACGGCACAAACAACACCATTTGGAAATCCAATATATCCACCAAAGCAGTGAATAAGAATAATCCAATTGCTCGTCCATTAGATACGGGTAATTTTGTAGTCAGAAATGGAGAAGGAACTAACGATGACAATATCTTGTGGCAGAGTTTTGATTATCCTGGTGACACAACGCTGCCGGGAATGAGACTTGGATGGAACTTGGAGACTGGTCTAGAAAGAACTATATCTTCTTGGAAAAGTGTTGATGATCCTTCTGTGGGAGAATATTCTGGAAAAATAGTTCTCAGAGGGTACCCTCAATCGTTTGAATTCCAGGGAACTCGTATAATAACTAGAGCAGGGTCATGGAATGGCTTGTCTACTGTTGGAAATACGGGTCCATCTCGTGAAACGACGCAAAAATTTGTGTTGAATGAAAAAGAGGTGTATTATGAGTACGGGCTTCGTGATAGCTCGGTCTTCTGTGTAGTTACACTGATCCCTTCGGGCAAAGTGCAGACTTGGTATTGGACAACTCAAAGTAGAAACCGGCAACTCGTCTCAACTGGGGACAGAGATCCATGCGATCAATATGCTTTTTGTGGTGCAAATGGTGTATGCAACTATGAAGGTAACATTCCAAATTGTGAATGCATTAGAGGGTATGCTCCCAAGTCTACTGATCAGTGGAATATAGAAATTTGGTCCAATGGATGTGTTCCAAGGAATAAATCAAATTGCAAAAACAGTTACACAGATGGCTTCTTGAAGTACACCAACATGAAAATACCAGACACATCTTCATCAACGTACAATACAACCATGAACCTTGAAGAGTGTAAGAATTCGTGTATTAAAAACTGTTCTTGTACAGCATATGCAAGTTTAGATATTCGAGATGGAGGAAGTGGGTGTCTGCTTTGGTTTAATAATCTAGTTGACATGAGGAAATTCTCTCAACGGGGACAAGACTTGTATATCAGAGTCCCTGCTTCAGAATTAGATCATGCTGGCCATGGAAACATGAAGAAAAAGATAGTAGAAATCACAGTTGGGGTGATTATTTTCGGATTAGTCATAACTGCATGCATATTCATGATAAAAAATCCAGGGGCAGCAAGAAAACTTATCAGCAAGCATTACAAAATTAAACAGAAAAAAGAAGATGTTGAGTTGCCAACTTTCAATTTGTCAGTCTTAGCTAATGCTACTGAAAACTTTTCAATCAGAAACAAACTTGGAGAAGGTGGCTTTGGACCAGTTTATAAGGGCACACTGATAGATGGACAAGAGTTAGCAGTGAAAAGGCTTTCAAAGAAATCAGGACAAGGGTTAGAAGAGTTCAAAAATGAAGTAGCATTGATTGCAAAACTTCAGCATCGTAATCTTGTAAAGCTTCTTGGTTGTTGCATCGAAGGGGAAGAAAAAATATTAATTTATGAATACATGGTGAACAAAAGCTTGGACAAGTTTGTTTTTGGTTGGACCCTTATGATTTATTCTAAACATCTATGTATTTAA 1788 0.387 MLFIWFLLFSYMVTTSTSLDSLAMGQSIREGDTLVSAGGIIEVGFFSPGNSTRRYLGIWYTNVSPFTVVWVANRNTPLENKSGVLKLNERGILVLLNGTNNTIWKSNISTKAVNKNNPIARPLDTGNFVVRNGEGTNDDNILWQSFDYPGDTTLPGMRLGWNLETGLERTISSWKSVDDPSVGEYSGKIVLRGYPQSFEFQGTRIITRAGSWNGLSTVGNTGPSRETTQKFVLNEKEVYYEYGLRDSSVFCVVTLIPSGKVQTWYWTTQSRNRQLVSTGDRDPCDQYAFCGANGVCNYEGNIPNCECIRGYAPKSTDQWNIEIWSNGCVPRNKSNCKNSYTDGFLKYTNMKIPDTSSSTYNTTMNLEECKNSCIKNCSCTAYASLDIRDGGSGCLLWFNNLVDMRKFSQRGQDLYIRVPASELDHAGHGNMKKKIVEITVGVIIFGLVITACIFMIKNPGAARKLISKHYKIKQKKEDVELPTFNLSVLANATENFSIRNKLGEGGFGPVYKGTLIDGQELAVKRLSKKSGQGLEEFKNEVALIAKLQHRNLVKLLGCCIEGEEKILIYEYMVNKSLDKFVFGWTLMIYSKHLCI 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01338 595 SUPERFAMILY Protein kinase-like (PK-like) 474 586 IPR011009 -
Cca04g01338 595 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 180 IPR036426 -
Cca04g01338 595 ProSiteProfiles EGF-like domain profile. 280 317 IPR000742 -
Cca04g01338 595 Gene3D Phosphorylase Kinase; domain 1 459 571 - -
Cca04g01338 595 SMART blect_4 25 149 IPR001480 -
Cca04g01338 595 ProSiteProfiles Protein kinase domain profile. 496 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01338 595 Gene3D Hepatocyte Growth Factor 335 416 - -
Cca04g01338 595 ProSiteProfiles PAN/Apple domain profile. 336 419 IPR003609 -
Cca04g01338 595 Pfam S-locus glycoprotein domain 208 315 IPR000858 GO:0048544
Cca04g01338 595 Pfam Protein tyrosine and serine/threonine kinase 498 581 IPR001245 GO:0004672|GO:0006468
Cca04g01338 595 CDD B_lectin 26 149 IPR001480 -
Cca04g01338 595 ProSiteProfiles Bulb-type lectin domain profile. 19 143 IPR001480 -
Cca04g01338 595 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 583 - -
Cca04g01338 595 Pfam D-mannose binding lectin 67 175 IPR001480 -
Cca04g01338 595 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 14 583 - -
Cca04g01338 595 Gene3D - 13 146 IPR036426 -
Cca04g01338 595 SMART ntp_6 339 418 IPR003609 -
Cca04g01338 595 CDD PAN_AP_plant 333 419 - -
Cca04g01338 595 Pfam PAN-like domain 336 404 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01338 Cca-Chr4 17225630 17229261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01338 484 582 Receptor kinase-like Gene Family AT4G23130 67.677 3.31e-36 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01338 B_lectin 3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01338 - - gmx:100776576 879.782