LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca04g01333	ATGAATTCAAGTTCAACTTCAAATTTTAATGGTTTCGTTTTACCATGGTGGCTTTTGCCAAGTGACGCATCGCCTGGGTGGAACAACAAAGCAGACAATGCGTGGCAACTGAGTGCGGCAACCTTAGTGGGCCTACAGAGTGTTCCTGGGCTTGTGATTCTGTACGGCAGCATGGTAAAGAGAAAATGGGCGGTGAACTCGGCCTTCATGGCCCTGTACGCATTTGCCTGCGTGCTGATCTGTTGGGTTTTGTGGGCCCACCGCATGGCGTTCGGTGCGAAGCTTTTGCCGTTGGTGGGAAAGCCCAACCACGCTCTGGCGGGGAAGTTTCTCCTTGCGAAGTCAACGATTGGGTATTTCCCGATGGCTGACTTTGTGTTCTATCAGTTTGCTTTTGCGGCAATCACTGTTGTGTTGCTCGCAGGGTCTTTGCTCGGGAGGATGAATTTCTATGCGTGGATGGTTTTTGTGCCTTTCTGGCTTACGCTGTCTTACACTGTTGGTGCCTTCAGTATATGGGATGAACATGGCTTCCTTCAGGGAAAAATTATTGATTATGCTGGTGGATTTGTCATTCATTTGTCTTCCGGCGTTGCAGGTTTCACAGCAGCTTATTGGGTTGGTCCAAGAATTTCACATGACCGACAAAACTTTCCACCAAATAACATAATTCACATGCTTGGAGGTGCAGGGTTTTTGTGGATGGGTTGGACAGGGTTTAACGGTGGAGCTCCATTCCAAGTGGGAGAAATTGCATCGTTGGCCATCTTCAATACCCATTTATGCACTGCCACAAGCTTACTTGTTTGGCTTACACTTGACATGATTGTGTATACCAAGAGCTCAGTCATAGGTGCCGTCCAAGGAATGATCACTGGCCTCGTTTGCATCACACCAGGCGCAGGATTGGTGGATTCATGGGCAGCAGTATTGATGGGAGCTTTGTCTGGTTCCATTCCATGGTATACTATGATGGTGTTACATAAAAAATCAGCATTCTTTCAAAGCGTGGATGATACACTAGGAGTTTTTCACACTCATGCTGTGGCTGGTCTTCTTGGGGGACTCCTTTCTGGAGTCTTTGCCAAACCTAAGCTTCTAAGACTAATGTATCCCGAGTTGCCTTATTACCCTGGCTTATTCTACAGCTTTTTTGATGCGAAATTGGGTCTTGGCTTTAGGCAAATAGGGTTCCAATTACTAGGAGCAGGTTTTGTTGTTGTTTGGAATGTCCTTGTTACTAGCCTCATTTGTATTCTTATAAGTCGTATCGTGGATCTTAGGATGCAAGAAGAGGATCTTGAGGTTGGTGATGATGCTGCTCACGGGGAAGAAGCATATGCATTATGGGGTGATGGAGAGAGAATGAGGGTTCCTCTTCGTCTTCATATAAGTCCAACTATTCCTTCCTTGTGTCGGAGAAAGTTTTCAATTCCTCTCACCAGGAATGAAGAAGAATAG	1461	0.462	MNSSSTSNFNGFVLPWWLLPSDASPGWNNKADNAWQLSAATLVGLQSVPGLVILYGSMVKRKWAVNSAFMALYAFACVLICWVLWAHRMAFGAKLLPLVGKPNHALAGKFLLAKSTIGYFPMADFVFYQFAFAAITVVLLAGSLLGRMNFYAWMVFVPFWLTLSYTVGAFSIWDEHGFLQGKIIDYAGGFVIHLSSGVAGFTAAYWVGPRISHDRQNFPPNNIIHMLGGAGFLWMGWTGFNGGAPFQVGEIASLAIFNTHLCTATSLLVWLTLDMIVYTKSSVIGAVQGMITGLVCITPGAGLVDSWAAVLMGALSGSIPWYTMMVLHKKSAFFQSVDDTLGVFHTHAVAGLLGGLLSGVFAKPKLLRLMYPELPYYPGLFYSFFDAKLGLGFRQIGFQLLGAGFVVVWNVLVTSLICILISRIVDLRMQEEDLEVGDDAAHGEEAYALWGDGERMRVPLRLHISPTIPSLCRRKFSIPLTRNEEE	486

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca04g01333	486	PANTHER	AMMONIUM TRANSPORTER	12	476	-	-
	Cca04g01333	486	TIGRFAM	amt: ammonium transporter	32	447	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Cca04g01333	486	PRINTS	Rhesus blood group protein signature	129	145	IPR002229	GO:0005887
	Cca04g01333	486	PRINTS	Rhesus blood group protein signature	224	242	IPR002229	GO:0005887
	Cca04g01333	486	PRINTS	Rhesus blood group protein signature	255	277	IPR002229	GO:0005887
	Cca04g01333	486	PRINTS	Rhesus blood group protein signature	348	364	IPR002229	GO:0005887
	Cca04g01333	486	PANTHER	AMMONIUM TRANSPORTER MEP2	12	476	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Cca04g01333	486	Pfam	Ammonium Transporter Family	34	447	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Cca04g01333	486	ProSitePatterns	Ammonium transporters signature.	185	210	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Cca04g01333	486	Gene3D	Ammonium transporter AmtB like domains	20	450	IPR029020	-
	Cca04g01333	486	SUPERFAMILY	Ammonium transporter	27	428	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca04g01333	Cca-Chr4	17131260	17135770	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca04g01333	122	455	Inorganic Solute Cotransporters	AT2G38290	60.778	5.95e-138	400

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca04g01333	K03320		-	gmx:100815876	867.455