Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01332 ATGGCAAAGCATAAGAATTTTGTTCTGTACTCTCTCTTATTCATTATCATTCCCATGGTGGGAGCCTTGAGAAGCATCACTCCAGGCCAATCCATCCACCACAACGAGACCCTGGTTTCAGATTCTGGAACTTTTGAAGCAGGATTCTTCACCCTAGGGAATTCACAGAACAATTATTTTTGTATATGGTACAAGAGTTTAACACCTAGGACAATTGTATGGGTAGCCAACAGAGACACCCCAGTTGATAACTCTACAGCAATGTTCAAAGTCACTGATGCAGGAAATCCAGTTATAGTTGATGGCTCAGGGACCATAATATGGTCCTCCAATGCTTCAAAAACTGCACGGAATCCTGTTCTGTTGCTGCAAGACACAGGAAACCTTGTTGTGGAAAATGGTGGGAATGGGAATGGGAACATTGTGTGGCAAAGCTTTGATTACCCTGGTGACACTTTGCTCCCTGGTATGGTTCTTCATGGTGATAGGGTTAGTGGTGAGTATAATTCTCTGACATGTTGGAGAAACTCTGGAGATCCTGGAAGAGGTGAATTTTCATATCATTTTGATGGTAGTGGTTATCCTCAACTTGTGATCACAAAGGGGACAGGGTTGTTGTATAGACTAGGGTCATGGAATGGTTTTTTCTTCAGCGAGATTCCTTGGGAAACACTAAACAGTTACTTCAATTTCTCTTTTGAGTTAACTGAGGAGGATGTTCAGTTTAAATATGAGACTTTGGATGATTCAATTGTTTCAAGATACATGATCACTCCCACGGGCACTGTGCAACGTTTTCTGTGGTCATCTGAGGCAGAAACTTGGCAACTTTTTCAGGCTGGTCCTAGGGACCAGTGTGATAACTATGCCTTTTGTGGTGCTAATTCTGATTGCAGTGTTGGTAACTCTCCAATATGTGAGTGCGTTAAAGGTTTCACACCTAAAACTCCACAAAAATGGAGTGTGTCAAATTGGACTGATGGGTGTGTTAGAAAGGTGAATTTGGACTGTGATGAAAGAGATGGGTTTGTTAAGCTCTCCGGAATGAAACGGCCAGACACGTCTTCTTCATGGTTTGATAAGACCATGGATCTCCAAGAATGTGAGAATAAGTGCTTGAAAAACTGCAGTTGCATAGCATATGCTAGTTTAGATATTAGAGATGGTGGAAGTGGCTGCATAATTTGGTTTAATGACATCATTGACATGAGGAAAGATAGTTCTATAGGGCAAGACATTTTCCTAAAGGTGTCTGCTTCTGAATTAGGTAACTCAGATAATGCAAAAAAGAAAAAGTTAGTAGGGATTCTGGTTGGAATTGGGATACTTGTATTTGTCATCACAATAGTTGGATATGTCATCTATCTAAAGAGGAAGAAACTTTGGAAGTCAGGTATGGACAGAGTAATTGACCAAGAGAATCATATTGAAAAGTGTGAGAAGGAAAGCAATGACTTGCCAACATTTGATTTTTCAACCGTAGTTAATGCCACAGATGACTTTTCCCCCAATAACATATTGGGAGAAGGTGGATATGGCCCAGTTTACAAGGGTGTACTAGGAAATGGGAGAGAAATTGCCATCAAGCGACTTTCTTTGAAATCTGGACAAGGACCAAAGGAATTCAAAAATGAAGTTTTGTTAATTGCCAATCTTCAACATCGAAATCTTGTGAAACTTCTAGGTTGTTGCATTGAGAATGATGAAAGAATCCTAATCTATGAATACATGCCTAACAGAAGTTTGGATAACTTTATTTTTGATCAAACTAGAAGCATAGAGTTGGATTGGAATAAACGTTTACAAATTATAGGCGGAATTGCTCGAGGACTTGTCTATCTCCATCAAGATTCTAGACTAAGAATCATCCACAGAGACTTAAAAACCAGTAACATTCTTCTTGACAATGATATGAACCCAAAAATATCAGACTTTGGACTGGCCAGGGTTTTTGGAGGTGATCAAGCTGAGGCCATTACATTAAGAGTAGTAGGAACTCATGGTTACATGCCCCCTGAGTATGCAGTATATGGGACTTTTTCTGTGAAGTCTGATGTCTTCAGCTTTGGGGTTATTATACTAGAGATGGTTAGTGGGAAGAAGAACAGAGAATTTTCTGACCCACAACACAATCTTAACCTTCTTGGACATGCATGGAGACTGTGGAGTGAGGATAGACCATTGGAGCTGATAGAAGACTCCCTTAGTGATTCTGTTATTGCAGCTGAGGCATTAAGATGTATTCAAATAGGGCTCTTGTGTGTGCAAGAGAGACCTGATGATAGGCCAGACATGTCATCTGTTGTTCTAATGTGGAATGGAGAGAGAGCATTGCCTAATCCAAAACAACCTGGATTTTATCCACATGAAGTTTCAACAACCAAACAAGAACTGTCTTCAACAAATGAAATTTCCATTTCAATGATACAGGCAAGATAG 2439 0.4002 MAKHKNFVLYSLLFIIIPMVGALRSITPGQSIHHNETLVSDSGTFEAGFFTLGNSQNNYFCIWYKSLTPRTIVWVANRDTPVDNSTAMFKVTDAGNPVIVDGSGTIIWSSNASKTARNPVLLLQDTGNLVVENGGNGNGNIVWQSFDYPGDTLLPGMVLHGDRVSGEYNSLTCWRNSGDPGRGEFSYHFDGSGYPQLVITKGTGLLYRLGSWNGFFFSEIPWETLNSYFNFSFELTEEDVQFKYETLDDSIVSRYMITPTGTVQRFLWSSEAETWQLFQAGPRDQCDNYAFCGANSDCSVGNSPICECVKGFTPKTPQKWSVSNWTDGCVRKVNLDCDERDGFVKLSGMKRPDTSSSWFDKTMDLQECENKCLKNCSCIAYASLDIRDGGSGCIIWFNDIIDMRKDSSIGQDIFLKVSASELGNSDNAKKKKLVGILVGIGILVFVITIVGYVIYLKRKKLWKSGMDRVIDQENHIEKCEKESNDLPTFDFSTVVNATDDFSPNNILGEGGYGPVYKGVLGNGREIAIKRLSLKSGQGPKEFKNEVLLIANLQHRNLVKLLGCCIENDERILIYEYMPNRSLDNFIFDQTRSIELDWNKRLQIIGGIARGLVYLHQDSRLRIIHRDLKTSNILLDNDMNPKISDFGLARVFGGDQAEAITLRVVGTHGYMPPEYAVYGTFSVKSDVFSFGVIILEMVSGKKNREFSDPQHNLNLLGHAWRLWSEDRPLELIEDSLSDSVIAAEALRCIQIGLLCVQERPDDRPDMSSVVLMWNGERALPNPKQPGFYPHEVSTTKQELSSTNEISISMIQAR 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01332 812 SMART serkin_6 501 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01332 812 Gene3D - 21 146 IPR036426 -
Cca04g01332 812 ProSiteProfiles Protein kinase domain profile. 501 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01332 812 SUPERFAMILY Protein kinase-like (PK-like) 485 771 IPR011009 -
Cca04g01332 812 Gene3D Phosphorylase Kinase; domain 1 463 576 - -
Cca04g01332 812 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 812 - -
Cca04g01332 812 Gene3D Hepatocyte Growth Factor 334 412 - -
Cca04g01332 812 Pfam Protein kinase domain 504 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01332 812 SMART blect_4 29 149 IPR001480 -
Cca04g01332 812 ProSiteProfiles EGF-like domain profile. 282 318 IPR000742 -
Cca04g01332 812 Pfam S-locus glycoprotein domain 207 315 IPR000858 GO:0048544
Cca04g01332 812 PIRSF SRK 1 812 IPR024171 GO:0004674
Cca04g01332 812 CDD STKc_IRAK 507 771 - -
Cca04g01332 812 CDD B_lectin 35 149 IPR001480 -
Cca04g01332 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Cca04g01332 812 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 180 IPR036426 -
Cca04g01332 812 Pfam PAN-like domain 337 403 IPR003609 -
Cca04g01332 812 Gene3D Transferase(Phosphotransferase) domain 1 577 779 - -
Cca04g01332 812 SMART ntp_6 338 417 IPR003609 -
Cca04g01332 812 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 15 812 - -
Cca04g01332 812 Pfam D-mannose binding lectin 71 175 IPR001480 -
Cca04g01332 812 CDD PAN_AP_plant 333 418 - -
Cca04g01332 812 ProSiteProfiles PAN/Apple domain profile. 337 418 IPR003609 -
Cca04g01332 812 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01332 Cca-Chr4 17075585 17079482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01332 433 789 Receptor kinase-like Gene Family AT4G23190 49.863 9.47e-123 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01332 Pkinase 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01332 - - ccaj:109805721 1030.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01332 04 17075585 17079482 Cca04g01332 04 17075585 17079482 ECH