Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01330 ATGGTGCATAGCATCATAGTGTTATGTATTTGGTTCTTCTCTCTCTTCCACATGTTGAGAACATCCACTTCACTAGACAGTTTAGCAGTGAGTGAATCGATCAGAGACGGTGAGACTTTGGTTTCAGCAGGTGGAATTATTGAAGTGGGTTTCTTCAGTCCAGGAAATTCAACAAGAAGATATTTGGGTATATGGTACACAAATGTAAGCCCTTTAACAGTGGTGTGGGTGGCCAACAAAAATACACCTCTTGAGAATAAATCAGGAGTTCTCAAACTCAATGAAAAAGGGATTCTTGAGCTTCTTAATGGCACAAACAGCACCATTTGGTCATCCAATATGTCCACCAAAGCAGTGAATAATCCAATTGCTCATCTCTTGGATTCGGGAAATTTTGTGGTGAAATATGGACAGGAAAATAACGATGACAACATCTTGTGGCAGAGTTTTGATTATCCAGGTGATACATTGATGCCAGGAATGAAACTTGGATGGAACTTGGAGACTGGTCTAGAAACATTTCTATTATCTTGGAGAAGTGTTGATGATCCTGCTGAGGGAGAATATGCTATAAAAATTGATCTTAGAGGGTATCCTCAAATTATTAAATTCAAGGGGCCTGATATAGAATCGAGAGCAGGGTCATGGAATGGATTGTCTACAGTTGGAAATCCCGATCCGGGTTCAACTCGTTCACAAAATTTTGTGTTGAATGAAAAAGAGGTGTATTTTGAGTTCGAGCCTAGTAGAACAACCTTCAGCGTGTTGACACTGACACCTTCAGGCACACGACAGATTATGTTTTGGACAACTCAAAGAAGCACCCCGCAAGTTGTCTTGTCAAATGAGGACACAGATCAATGCCAGAGTTATGCCTTCTGTGGTGCAAATTCTATATGCGTTTATGATGGTAACGTTCCAAGTTGTGAAACTTTTTCTTTTTCAttttctttTGAATGCCTGAGAGGGTATGTTCCCATGTATCATGATCAACGGAATACAGCAATTTGGTCCAACGGTTGTGTTCCAATGAATAAATCTAGTTGCAAAAACAGTTATACAGATGGCTTCTTCAAGTACACAAACATGAAATTGCCAGACACCTCTTCATCATGGTTTAGTAAGACCATGAACCTTGAAGAATGCAGGAAGTCGTGTCTTAAAAACTGTTCTTGTACAGCATATGCAAATTTAGATATCCGTGATGGAGGAAGTGGCTGTCTACTTTGGTTTAATACTCTAGTTGACATGATGAACTTCTCTCAAGAGGGACAAGACTTTTATATCAGACTCCCTGCTTCAGAATTAGATCATGGCGGCCACAGAAAAATCAAGATAAAGATAGTAGTAATCACTGTTGGTGTGACTATTTTTGGATTAATCAGCATATGTGCATGCATATTGATAAATAAAAATCCAGGGGTTGCAAGAAAAATTTACAACAGGCATTACAAAAATATACTGAGGAAGGAAGACATTGATTTGCCAACTTTCAGTTTCTCAGTCTTAGCTAATGCCACTGAAAACTTTTCAACCAAAAACAAACTTGGAGAAGGTGGTTTTGGACCAGTATACAAGGGCACACTGATAGATGGGAAAGAGTTAGCTGTGAAAAGGCTTTCAAAAGAATCTGGACAAGGGTTGGAAGAGTTCAAAAATGAAGTGGCATTGATTTCCAAACTTCAGCACCGTAATCTTGTAAAGCTTCTTGGTTGCTGCATTGAAGGAGAGGAAAAAATGCTGATTTATGAATACATGCCCAACCATAGCTTGGACTACTTTGTTTTTGATGAAACCAAAAGGAAGTTGCTAGATTGGCACAAGCGTTTCAACATTATTAGTGGTATTGCTAGAGGACTTCTGTATCTTCATCAAGACTCTATGCTGAGAATTATTCATAGAGATTTAAAAACAAGCAATGTTTTACTAGATACAAATTTAAATCCCAAAATATCAGATTTTGGTTTGGCTAGATTATTTTTGGGAGATCAAGTTGAGGCAAAAACAAATAAGGTGGCTGGAACTTATGGTTATATCCCTCCTGAGTATGCTGCACGTGGACACTTCTCAATGAAATCAGATGTTTTTAGTTATGGTGTGATAGTATTAGAGATTGTAAGTGGGAAGAAAAACAGGGAATTTTCAGACACAGAACACTGCAATAATCTCCTTGGACATGCATGGATATTATGGACCAAAGAGAGAGCACTGGAACTATTGGATGAATTGTTAGGAGAACAATGCTTGCCGTCTGAAGTCATACGATGCATACAAGTAGGCCTATTATGTGTGCAACAAAGACCAAAAGATAGACCAGATATGTCATCAGCGGTTTTAATGTTGAATGGTGATAAACTATTGCCAAAGCCAAAGGTTCCTGGTTTTTACACAGAAACAGATGTTAAACCTGAAACAAATTGTTCATCAGGAAATCACAAGTTGTTCTCAGTTAATGAAGTTTCCATCACAACGTTAGATGCAAGATAG 2487 0.3828 MVHSIIVLCIWFFSLFHMLRTSTSLDSLAVSESIRDGETLVSAGGIIEVGFFSPGNSTRRYLGIWYTNVSPLTVVWVANKNTPLENKSGVLKLNEKGILELLNGTNSTIWSSNMSTKAVNNPIAHLLDSGNFVVKYGQENNDDNILWQSFDYPGDTLMPGMKLGWNLETGLETFLLSWRSVDDPAEGEYAIKIDLRGYPQIIKFKGPDIESRAGSWNGLSTVGNPDPGSTRSQNFVLNEKEVYFEFEPSRTTFSVLTLTPSGTRQIMFWTTQRSTPQVVLSNEDTDQCQSYAFCGANSICVYDGNVPSCETFSFSFSFECLRGYVPMYHDQRNTAIWSNGCVPMNKSSCKNSYTDGFFKYTNMKLPDTSSSWFSKTMNLEECRKSCLKNCSCTAYANLDIRDGGSGCLLWFNTLVDMMNFSQEGQDFYIRLPASELDHGGHRKIKIKIVVITVGVTIFGLISICACILINKNPGVARKIYNRHYKNILRKEDIDLPTFSFSVLANATENFSTKNKLGEGGFGPVYKGTLIDGKELAVKRLSKESGQGLEEFKNEVALISKLQHRNLVKLLGCCIEGEEKMLIYEYMPNHSLDYFVFDETKRKLLDWHKRFNIISGIARGLLYLHQDSMLRIIHRDLKTSNVLLDTNLNPKISDFGLARLFLGDQVEAKTNKVAGTYGYIPPEYAARGHFSMKSDVFSYGVIVLEIVSGKKNREFSDTEHCNNLLGHAWILWTKERALELLDELLGEQCLPSEVIRCIQVGLLCVQQRPKDRPDMSSAVLMLNGDKLLPKPKVPGFYTETDVKPETNCSSGNHKLFSVNEVSITTLDAR 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01330 828 ProSiteProfiles Bulb-type lectin domain profile. 25 147 IPR001480 -
Cca04g01330 828 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 184 IPR036426 -
Cca04g01330 828 SMART ntp_6 352 431 IPR003609 -
Cca04g01330 828 ProSiteProfiles Protein kinase domain profile. 510 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01330 828 PIRSF SRK 1 828 IPR024171 GO:0004674
Cca04g01330 828 Gene3D Hepatocyte Growth Factor 349 430 - -
Cca04g01330 828 Pfam S-locus glycoprotein domain 212 311 IPR000858 GO:0048544
Cca04g01330 828 CDD PAN_AP_plant 346 432 - -
Cca04g01330 828 SMART serkin_6 510 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01330 828 Gene3D Phosphorylase Kinase; domain 1 484 585 - -
Cca04g01330 828 Gene3D Transferase(Phosphotransferase) domain 1 586 787 - -
Cca04g01330 828 Pfam Protein tyrosine and serine/threonine kinase 512 777 IPR001245 GO:0004672|GO:0006468
Cca04g01330 828 CDD B_lectin 31 153 IPR001480 -
Cca04g01330 828 CDD STKc_IRAK 516 783 - -
Cca04g01330 828 SMART blect_4 31 153 IPR001480 -
Cca04g01330 828 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 20 825 - -
Cca04g01330 828 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 825 - -
Cca04g01330 828 ProSiteProfiles PAN/Apple domain profile. 349 432 IPR003609 -
Cca04g01330 828 Pfam D-mannose binding lectin 73 179 IPR001480 -
Cca04g01330 828 Gene3D - 21 150 IPR036426 -
Cca04g01330 828 Pfam PAN-like domain 349 417 IPR003609 -
Cca04g01330 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Cca04g01330 828 SUPERFAMILY Protein kinase-like (PK-like) 493 792 IPR011009 -
Cca04g01330 828 Pfam Domain of unknown function (DUF3403) 787 828 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01330 Cca-Chr4 17038007 17045789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01330 500 828 Receptor kinase-like Gene Family AT4G23140 54.118 1.27e-122 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01330 PK_Tyr_Ser-Thr 9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01330 - - gmx:100784066 1373.99