Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01328 ATGACCATTCATCCACTCCCTTCCATGCTTGTCATAGCAAACCTACTCTTCTTTTCGCACCAAATTTCCTCCGAAACTGACACGCTCACCCAGTTTCAGTCACTTCCCGATGGAACCAGAACCACCTTGGTATCCAAAGATGGAACCTTCGAGTTGGGTTTCTTCAGCCCAGGTAGTTCCACAAACCGCTACCTAGGAATCTGGTTCAAGAACATCCCACTAAAAACCGTCGTTTGGGTCGCCAACCGTGACAACCCTATCAACAACAACTCCACCAAGTTAACCATAGCCAAAGAAGGAAACCTGGCCCTCCTCACCGAAAACGACACCGTTCACTGGTCAACAAACGCAACAGCAAAAGCGATCAACATCAACGTTGTAGCACAACTCTTGGATTCAGGAAACTTGGTCCTAAGAGACGAGAAAGACAACTATTCTCAAAACTTGTTGTGGCAAAGCTTCGACCATCCTTCGGACACGCTTTTACCAGGAATGAAACTAGGATGGGAAGTAACAAAGGATGTTAATCTCAACAGGTACCTCACTGCATGGAACAACTGGGAAGACCCATCTTCGGGTCACTTCACTTATGGCTTCTCGAGAAGCACTATTCCCGAGAAGCAAATGTGGAACGGGTCATCATTGGTCTTCCGAAACGGTCCTTGGAATGGTATTCGATTCAGCGGCACACCCTCGTTGAAGCACCGCGCATTGTTCGGTCTTACTTACATGTACGACGGGGACGAGTGTTATTTCCAATTCTACCCCAAGGACAAGTCGTTGATTTCCAGAATCGTCCTCAACCAAACCCTATACGTTCTTCAGCGTTTCATTTGGGTCGAGGGAAGTCAAAAGTGGGAGTTGTACATGACTGTTCCAGGAGGATACTGTGACGGGTATAACCACTGTGGCTCCTTCGGGTACTGTGCCATGGTGGGTAAGTCTCCGCTGTGCGAGTGTTTGCATGGGTTTGAACCAAAATCGCCGCGGAATTGGGTTGCAAGGAATTGGAGTGAAGGGTGCGTGCGTAGTAGCAAAACATGGAGGTGTAGGGAGAAAAACAATGACGGTTTCGTCTTGTTTAGTAACATGAAGGTTCCGGACACAAACACGTCGTGGATTAATAGAAGTATGACAATAGAGGAATGTAAGGCCAAGTGTTGGGAAAATTGTTCGTGTACTGCGTATGCTAACTCAGACATCATTGGAAAGGGAAGTGGTTGTATTCTCTGGTTTGGCGATCTATTGGACATGAGACAGCTTCCAAATGCAGGGCAAGATCTGTACGTTAGAGTCTACATCTCCCAAATGGAAAATCAAGATGCAAAAGGTGGTTCAACTTCTAGGAAAGTGGTAGTTGTGGTCACAACAGTTGTTTCATCTGTTATTATTGCGATGGTTGCAATTTTCATGCTCGTTTACTGCAACAGTAAAACCAAATTTAGAGGCAAAGATAACATCAAGACAAAAGTTAAAATAGATGAGGACAAAGAAGATTTGGAGCTGCCTTTATTTGACTTTGATACCATAGCATGTGCTACTAATGATTTCTCAAGTGACAACAAGCTTGGACAAGGTGGTTTTGGTCCAGTATATAAAGGCACATTACCAGATGGACAAGATATTGCAGTCAAAAGGCTTTCACATACATCTACACAAGGATTAACAGAATTTAAGAATGAGGTTATATTTTGTTCTAAACTTCAACATCGGAATCTTGTTAAAGTTCTTGGTTGTTGTATCGAAGAACAAGAGAAATTACTCATTTATGAGTACATGCCCAACAAAAGTCTAGACTTCTTTCTTTTTGATTATTCTCAAAGCAAACTTCTAGATTGGTCCAAGCGATACAACATTATAAATGGAATTGTCCGGGGATTGCTTTATCTTCACCAAGATTCTAGATTGAGGATCATACATAGAGATTTAAAAACAAGTAATATTTTGCTAGATAATGACATGAATCCAAAAATTTCTGATTTTGGGTTAGCCCGAATGTGTAGAGGTGATCAGGTTGAAGGGAATACAAGTAGAGTTGTTGGTACATATGGTTATATGGCACCTGAATATGCAATTGATGGAGTATTTTCTATCAAATCTGATGTCTATAGCTTTGGTATCTTACTACTAGAAGTTTTAAGTGGAAAGAAAAACAAAGGCATTTCCTGTTCTAACGACAACAATAATCTTGTTGGACATGCATGGAGGTTGTGGAAAGATGGCAATCTAATGCAATTTATTGACTCTAATTTAGAGGATTCATGCATTCTATCTGAAGCCTTGCGTTGCATTCATATTGGTCTTTTGTGTGTGCAACATCATCCAAATGATAGGCCAAACATGGCATCTGTGGTTGCTTTATTAAGTTGCGAGAACGCATTGCCTCCACCAAAGGATCCTAGTTACTTAATAGAAGAAACCTCAACTGAAAGCGAATTTTATTCTAAGAATTTGACATCCTTGTCAAATAATGATGTCACTATTTCAATGTTAAAGAGGTCAGGTCAGATTCTGACCTGGACAGCCCACTTGCCTTCCAACCCTGAGCCTATAAGGCGAGAGGGCTTGAGGCCTGGCTTTTGTGGTTCACAGTCAGATATTGACCGAGTGACTCTTAGCGAGGGAGCCGATCAAGGTTATAGTCGCCCTGAGCCTATAAGGCGTGAGGGCTTGAGGCCTGGCTTTTGTGGTTCACAGTCGGATATTGACCGAGTGACTCTTAGCGAGGGAGCCGATCAAGGTTATAGTCGGTCAATCGTTGGTAGAGGGGTCAGGTCGAATTCTGACCTGGACAGTCCACTTGCCTTCCAGCCCTGA 2817 0.4292 MTIHPLPSMLVIANLLFFSHQISSETDTLTQFQSLPDGTRTTLVSKDGTFELGFFSPGSSTNRYLGIWFKNIPLKTVVWVANRDNPINNNSTKLTIAKEGNLALLTENDTVHWSTNATAKAININVVAQLLDSGNLVLRDEKDNYSQNLLWQSFDHPSDTLLPGMKLGWEVTKDVNLNRYLTAWNNWEDPSSGHFTYGFSRSTIPEKQMWNGSSLVFRNGPWNGIRFSGTPSLKHRALFGLTYMYDGDECYFQFYPKDKSLISRIVLNQTLYVLQRFIWVEGSQKWELYMTVPGGYCDGYNHCGSFGYCAMVGKSPLCECLHGFEPKSPRNWVARNWSEGCVRSSKTWRCREKNNDGFVLFSNMKVPDTNTSWINRSMTIEECKAKCWENCSCTAYANSDIIGKGSGCILWFGDLLDMRQLPNAGQDLYVRVYISQMENQDAKGGSTSRKVVVVVTTVVSSVIIAMVAIFMLVYCNSKTKFRGKDNIKTKVKIDEDKEDLELPLFDFDTIACATNDFSSDNKLGQGGFGPVYKGTLPDGQDIAVKRLSHTSTQGLTEFKNEVIFCSKLQHRNLVKVLGCCIEEQEKLLIYEYMPNKSLDFFLFDYSQSKLLDWSKRYNIINGIVRGLLYLHQDSRLRIIHRDLKTSNILLDNDMNPKISDFGLARMCRGDQVEGNTSRVVGTYGYMAPEYAIDGVFSIKSDVYSFGILLLEVLSGKKNKGISCSNDNNNLVGHAWRLWKDGNLMQFIDSNLEDSCILSEALRCIHIGLLCVQHHPNDRPNMASVVALLSCENALPPPKDPSYLIEETSTESEFYSKNLTSLSNNDVTISMLKRSGQILTWTAHLPSNPEPIRREGLRPGFCGSQSDIDRVTLSEGADQGYSRPEPIRREGLRPGFCGSQSDIDRVTLSEGADQGYSRSIVGRGVRSNSDLDSPLAFQP 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01328 938 ProSiteProfiles Protein kinase domain profile. 517 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01328 938 SUPERFAMILY Protein kinase-like (PK-like) 500 802 IPR011009 -
Cca04g01328 938 Pfam D-mannose binding lectin 76 184 IPR001480 -
Cca04g01328 938 MobiDBLite consensus disorder prediction 916 938 - -
Cca04g01328 938 MobiDBLite consensus disorder prediction 875 899 - -
Cca04g01328 938 ProSiteProfiles Bulb-type lectin domain profile. 26 151 IPR001480 -
Cca04g01328 938 MobiDBLite consensus disorder prediction 920 938 - -
Cca04g01328 938 Pfam Protein tyrosine and serine/threonine kinase 520 787 IPR001245 GO:0004672|GO:0006468
Cca04g01328 938 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 190 IPR036426 -
Cca04g01328 938 CDD STKc_IRAK 523 788 - -
Cca04g01328 938 ProSiteProfiles PAN/Apple domain profile. 350 433 IPR003609 -
Cca04g01328 938 PIRSF SRK 1 834 IPR024171 GO:0004674
Cca04g01328 938 Gene3D Transferase(Phosphotransferase) domain 1 593 794 - -
Cca04g01328 938 Pfam S-locus glycoprotein domain 217 328 IPR000858 GO:0048544
Cca04g01328 938 SMART serkin_6 517 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01328 938 CDD B_lectin 34 157 IPR001480 -
Cca04g01328 938 CDD PAN_AP_plant 351 432 - -
Cca04g01328 938 Gene3D Phosphorylase Kinase; domain 1 476 592 - -
Cca04g01328 938 Gene3D - 20 154 IPR036426 -
Cca04g01328 938 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 15 817 - -
Cca04g01328 938 SMART ntp_6 353 432 IPR003609 -
Cca04g01328 938 SMART blect_4 34 157 IPR001480 -
Cca04g01328 938 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Cca04g01328 938 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 817 - -
Cca04g01328 938 Pfam PAN-like domain 350 418 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01328 Cca-Chr4 16975819 17001575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01328 469 834 Receptor kinase-like Gene Family AT4G23150 52.717 5.88e-126 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01328 PK_Tyr_Ser-Thr 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01328 - - gmx:100792537 1144.03