Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01327 ATGGCCATTCTTACCATTCTCATTCTCATGACCAAACTATTTTTTTTCTTCTCCAAATTTTCAGCCGCAACAGATACCATTACACAGTCAGAGTCACTCGAAGAAAACACGACCTTGGTTTCAAACGACGAAACCTTCGAGTTGGGTTTCTTCACCCCAGGTAGTAGTTCCCAAAACCGCTACCTAGGAATATGGTACAAAAACATACCAGGAAGAACCGTGGTTTGGGTTGCCAACCGCGAAACTCCAATCAAAGACAACTCCACCAAGTTAACCATAACCAAGCAGGGCAACCTCGTACTTGTCACCCAAAACGGCACCGTTATATGGTCAACAAACGCAACGACAAAAGCGATCGGTGTCGTGGCACAGTTGTTGGACTCGGGAAACTTGGTCCTACGAGATGAGAAAGACACGAACCCTGAAAACTATTTGTGGCAGAGCTTTGACCACCCTTCAGACACGTTTCTACCGGGAATGAAAATGGGATGGGACTTTAAACGAGGGCTCCATCGTGGCCTCACCGCATGGAAAAACTGGGATGACCCTTCTCCAGGGGACTTCACTGGGACAATTTTGCACACCAATAACCCTGAAGAGACTATGTGGAAGGGCACAATAGAAATCTACCGAATTGGTCCATTTGATGGCACAAAATTCAGCGGTAACCCATCTTTGCCATCCAACTCAGTAGTAAACTACACGTTTGTGTCCAACGAGGATGAGCTTTACTTAACATATAGCATGAACGATAAGTCAGTGATTTCAAGAATTGTGTTGAATCAATCACTTTATGTTCGCCAGCGTTTGACTTGGAATAAAGATAGTCAAAACTGGATGGTGTCTTCAAAGTTGCCGAGTGATTTATGCGACAACTATAATATTTGTGGCGCGTTTGGGATTTGTGACGTTGGTCAGGCACCGGTGTGTAGTTGTTTAGATGGGTTTAAGCCAAAGTCGCTGCAGAATTGGACCCAAATGAATTGGTATCAAGGTTGCGTGCACGAACAAACTTGGAGGTGTAGGGAAAAGAACATGGATGGGTTTCAAAAGTTTAGTAACATTAAGGCACCAGATACTAAAAGATCTTGGGTTAATGCAAGTATGACACTTGAGGAATGTAGGGTGACATGTTGGAAAAATTGTTCGTGTATGGCTTATGCAAATTCAGACATAAGGGGAGAAGGAAGTGGATGTGCTATTTGGTTCGATGATTTGTTGGATATAAGACTGATTCCAAATGCTGGACAAGATCTGTATATTAGATTGCCAGTGTCTGAAACAGCTCAAGAAAATGAAGACAATTCAAAGAAAAAGGTGGTTGTGATCGCAAGCATCATTTCCTCCGTCATTGCAATGCTACTAATTTTCATACTCATTTATTTGAGCAAAAAAACAAAATTTAGAGTGATGATCACCAAGATCAAAGCAAATAATAATGCAAGCCAACAAGAAGACTTTGAACTACCTTTGTTTCACTTTGCCTCAATAGCACATGCCACAAATCACTTCTCAAGTGACAATAAGTTGGGCGAAGGGGGTTTTGGGCCTGTATACAAAGGAACATTGTTGGATGGACAAATGGTTGCTGTTAAGAGACTTTCACAAACATCTGGACAAGGATTAAATGAATTTAAGAATGAGGTTATGTTATGTGCAAAACTTCAACATCGAAATCTTGTTAAAGTTCTTGGGTGTTGCATTCAAGAAAATGAGAAATTGCTCATATACGAATATATGGCCAACAAAAGCTTAGACTTCTTTCTTTTTGATTCTAGTCGAAGTAAATTTCTTGACTGGCCTAAGAGATTTTGCATCATAAATGGAATTGCTCGGGGACTACTTTATCTTCATCAAGACTCAAGACTAAGGATCATACATAGAGATCTTAAGGCGAGTAATGTTTTATTAGATAGTGAAATGAATCCAAAAATTTCAGATTTTGGCTTGGCACGAATGTGTGGAGGTGATCAAATTGAAGGGAAAACACGTAGAGTAGTTGGTACATATGGTTACATGGCACCTGAATATGCTTTTGATGGAATATTTTCCACCAAATCAGATGTGTTTAGCTTTGGTGTATTATTGCTAGAGATAGTAAGTGGCAAGAAAAATAATAGACTCTTCTATCCAAATGACTACAATAATCTTATTGGACATGCATGGAAAATGTGGAAAGATGGGAATCCAACGCAATTCATTGACGCTAGTTTGGAGGACTCATGCATTCTACAAGAAGCCTTGCGTTGCATTCATCTTGGTCTTTTATGCCTACAACATCATCCTAATGATAGGCCAAACATAGCATCTGTGGTTCTATTGTTGAGTAACGAGAATGTGTTGTCTCTACCAAAGGATCCTACCTACTTAATCAAAGACATCTCAACTGAAAGAGAATTTTCTTCAGAGAACTTTACATCCTCTTCTATTAATGATGTCACTGTCTCAGTGTTGAGTAGATAG 2463 0.4003 MAILTILILMTKLFFFFSKFSAATDTITQSESLEENTTLVSNDETFELGFFTPGSSSQNRYLGIWYKNIPGRTVVWVANRETPIKDNSTKLTITKQGNLVLVTQNGTVIWSTNATTKAIGVVAQLLDSGNLVLRDEKDTNPENYLWQSFDHPSDTFLPGMKMGWDFKRGLHRGLTAWKNWDDPSPGDFTGTILHTNNPEETMWKGTIEIYRIGPFDGTKFSGNPSLPSNSVVNYTFVSNEDELYLTYSMNDKSVISRIVLNQSLYVRQRLTWNKDSQNWMVSSKLPSDLCDNYNICGAFGICDVGQAPVCSCLDGFKPKSLQNWTQMNWYQGCVHEQTWRCREKNMDGFQKFSNIKAPDTKRSWVNASMTLEECRVTCWKNCSCMAYANSDIRGEGSGCAIWFDDLLDIRLIPNAGQDLYIRLPVSETAQENEDNSKKKVVVIASIISSVIAMLLIFILIYLSKKTKFRVMITKIKANNNASQQEDFELPLFHFASIAHATNHFSSDNKLGEGGFGPVYKGTLLDGQMVAVKRLSQTSGQGLNEFKNEVMLCAKLQHRNLVKVLGCCIQENEKLLIYEYMANKSLDFFLFDSSRSKFLDWPKRFCIINGIARGLLYLHQDSRLRIIHRDLKASNVLLDSEMNPKISDFGLARMCGGDQIEGKTRRVVGTYGYMAPEYAFDGIFSTKSDVFSFGVLLLEIVSGKKNNRLFYPNDYNNLIGHAWKMWKDGNPTQFIDASLEDSCILQEALRCIHLGLLCLQHHPNDRPNIASVVLLLSNENVLSLPKDPTYLIKDISTEREFSSENFTSSSINDVTVSVLSR 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01327 820 SUPERFAMILY Protein kinase-like (PK-like) 487 788 IPR011009 -
Cca04g01327 820 CDD B_lectin 30 152 IPR001480 -
Cca04g01327 820 Pfam Protein tyrosine and serine/threonine kinase 507 772 IPR001245 GO:0004672|GO:0006468
Cca04g01327 820 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 32 814 - -
Cca04g01327 820 CDD PAN_AP_plant 342 424 - -
Cca04g01327 820 SMART ntp_6 344 423 IPR003609 -
Cca04g01327 820 SMART serkin_6 504 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01327 820 ProSiteProfiles PAN/Apple domain profile. 341 424 IPR003609 -
Cca04g01327 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Cca04g01327 820 Pfam D-mannose binding lectin 73 178 IPR001480 -
Cca04g01327 820 Gene3D - 18 149 IPR036426 -
Cca04g01327 820 Pfam S-locus glycoprotein domain 210 320 IPR000858 GO:0048544
Cca04g01327 820 CDD STKc_IRAK 510 772 - -
Cca04g01327 820 PIRSF SRK 1 820 IPR024171 GO:0004674
Cca04g01327 820 ProSiteProfiles Protein kinase domain profile. 504 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01327 820 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 814 - -
Cca04g01327 820 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 183 IPR036426 -
Cca04g01327 820 Gene3D Transferase(Phosphotransferase) domain 1 580 783 - -
Cca04g01327 820 Gene3D Phosphorylase Kinase; domain 1 465 579 - -
Cca04g01327 820 SMART blect_4 30 152 IPR001480 -
Cca04g01327 820 Pfam PAN-like domain 341 409 IPR003609 -
Cca04g01327 820 ProSiteProfiles Bulb-type lectin domain profile. 24 146 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01327 Cca-Chr4 16936795 16941271 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01327 430 790 Receptor kinase-like Gene Family AT4G23190 48.509 2.67e-119 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01327 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01327 - - gmx:100786696 1365.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01327 04 16936795 16941271 Cca04g01327 04 16936795 16941271 ECH