Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g01327 | ATGGCCATTCTTACCATTCTCATTCTCATGACCAAACTATTTTTTTTCTTCTCCAAATTTTCAGCCGCAACAGATACCATTACACAGTCAGAGTCACTCGAAGAAAACACGACCTTGGTTTCAAACGACGAAACCTTCGAGTTGGGTTTCTTCACCCCAGGTAGTAGTTCCCAAAACCGCTACCTAGGAATATGGTACAAAAACATACCAGGAAGAACCGTGGTTTGGGTTGCCAACCGCGAAACTCCAATCAAAGACAACTCCACCAAGTTAACCATAACCAAGCAGGGCAACCTCGTACTTGTCACCCAAAACGGCACCGTTATATGGTCAACAAACGCAACGACAAAAGCGATCGGTGTCGTGGCACAGTTGTTGGACTCGGGAAACTTGGTCCTACGAGATGAGAAAGACACGAACCCTGAAAACTATTTGTGGCAGAGCTTTGACCACCCTTCAGACACGTTTCTACCGGGAATGAAAATGGGATGGGACTTTAAACGAGGGCTCCATCGTGGCCTCACCGCATGGAAAAACTGGGATGACCCTTCTCCAGGGGACTTCACTGGGACAATTTTGCACACCAATAACCCTGAAGAGACTATGTGGAAGGGCACAATAGAAATCTACCGAATTGGTCCATTTGATGGCACAAAATTCAGCGGTAACCCATCTTTGCCATCCAACTCAGTAGTAAACTACACGTTTGTGTCCAACGAGGATGAGCTTTACTTAACATATAGCATGAACGATAAGTCAGTGATTTCAAGAATTGTGTTGAATCAATCACTTTATGTTCGCCAGCGTTTGACTTGGAATAAAGATAGTCAAAACTGGATGGTGTCTTCAAAGTTGCCGAGTGATTTATGCGACAACTATAATATTTGTGGCGCGTTTGGGATTTGTGACGTTGGTCAGGCACCGGTGTGTAGTTGTTTAGATGGGTTTAAGCCAAAGTCGCTGCAGAATTGGACCCAAATGAATTGGTATCAAGGTTGCGTGCACGAACAAACTTGGAGGTGTAGGGAAAAGAACATGGATGGGTTTCAAAAGTTTAGTAACATTAAGGCACCAGATACTAAAAGATCTTGGGTTAATGCAAGTATGACACTTGAGGAATGTAGGGTGACATGTTGGAAAAATTGTTCGTGTATGGCTTATGCAAATTCAGACATAAGGGGAGAAGGAAGTGGATGTGCTATTTGGTTCGATGATTTGTTGGATATAAGACTGATTCCAAATGCTGGACAAGATCTGTATATTAGATTGCCAGTGTCTGAAACAGCTCAAGAAAATGAAGACAATTCAAAGAAAAAGGTGGTTGTGATCGCAAGCATCATTTCCTCCGTCATTGCAATGCTACTAATTTTCATACTCATTTATTTGAGCAAAAAAACAAAATTTAGAGTGATGATCACCAAGATCAAAGCAAATAATAATGCAAGCCAACAAGAAGACTTTGAACTACCTTTGTTTCACTTTGCCTCAATAGCACATGCCACAAATCACTTCTCAAGTGACAATAAGTTGGGCGAAGGGGGTTTTGGGCCTGTATACAAAGGAACATTGTTGGATGGACAAATGGTTGCTGTTAAGAGACTTTCACAAACATCTGGACAAGGATTAAATGAATTTAAGAATGAGGTTATGTTATGTGCAAAACTTCAACATCGAAATCTTGTTAAAGTTCTTGGGTGTTGCATTCAAGAAAATGAGAAATTGCTCATATACGAATATATGGCCAACAAAAGCTTAGACTTCTTTCTTTTTGATTCTAGTCGAAGTAAATTTCTTGACTGGCCTAAGAGATTTTGCATCATAAATGGAATTGCTCGGGGACTACTTTATCTTCATCAAGACTCAAGACTAAGGATCATACATAGAGATCTTAAGGCGAGTAATGTTTTATTAGATAGTGAAATGAATCCAAAAATTTCAGATTTTGGCTTGGCACGAATGTGTGGAGGTGATCAAATTGAAGGGAAAACACGTAGAGTAGTTGGTACATATGGTTACATGGCACCTGAATATGCTTTTGATGGAATATTTTCCACCAAATCAGATGTGTTTAGCTTTGGTGTATTATTGCTAGAGATAGTAAGTGGCAAGAAAAATAATAGACTCTTCTATCCAAATGACTACAATAATCTTATTGGACATGCATGGAAAATGTGGAAAGATGGGAATCCAACGCAATTCATTGACGCTAGTTTGGAGGACTCATGCATTCTACAAGAAGCCTTGCGTTGCATTCATCTTGGTCTTTTATGCCTACAACATCATCCTAATGATAGGCCAAACATAGCATCTGTGGTTCTATTGTTGAGTAACGAGAATGTGTTGTCTCTACCAAAGGATCCTACCTACTTAATCAAAGACATCTCAACTGAAAGAGAATTTTCTTCAGAGAACTTTACATCCTCTTCTATTAATGATGTCACTGTCTCAGTGTTGAGTAGATAG | 2463 | 0.4003 | MAILTILILMTKLFFFFSKFSAATDTITQSESLEENTTLVSNDETFELGFFTPGSSSQNRYLGIWYKNIPGRTVVWVANRETPIKDNSTKLTITKQGNLVLVTQNGTVIWSTNATTKAIGVVAQLLDSGNLVLRDEKDTNPENYLWQSFDHPSDTFLPGMKMGWDFKRGLHRGLTAWKNWDDPSPGDFTGTILHTNNPEETMWKGTIEIYRIGPFDGTKFSGNPSLPSNSVVNYTFVSNEDELYLTYSMNDKSVISRIVLNQSLYVRQRLTWNKDSQNWMVSSKLPSDLCDNYNICGAFGICDVGQAPVCSCLDGFKPKSLQNWTQMNWYQGCVHEQTWRCREKNMDGFQKFSNIKAPDTKRSWVNASMTLEECRVTCWKNCSCMAYANSDIRGEGSGCAIWFDDLLDIRLIPNAGQDLYIRLPVSETAQENEDNSKKKVVVIASIISSVIAMLLIFILIYLSKKTKFRVMITKIKANNNASQQEDFELPLFHFASIAHATNHFSSDNKLGEGGFGPVYKGTLLDGQMVAVKRLSQTSGQGLNEFKNEVMLCAKLQHRNLVKVLGCCIQENEKLLIYEYMANKSLDFFLFDSSRSKFLDWPKRFCIINGIARGLLYLHQDSRLRIIHRDLKASNVLLDSEMNPKISDFGLARMCGGDQIEGKTRRVVGTYGYMAPEYAFDGIFSTKSDVFSFGVLLLEIVSGKKNNRLFYPNDYNNLIGHAWKMWKDGNPTQFIDASLEDSCILQEALRCIHLGLLCLQHHPNDRPNIASVVLLLSNENVLSLPKDPTYLIKDISTEREFSSENFTSSSINDVTVSVLSR | 820 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g01327 | 820 | SUPERFAMILY | Protein kinase-like (PK-like) | 487 | 788 | IPR011009 | - | |
Cca04g01327 | 820 | CDD | B_lectin | 30 | 152 | IPR001480 | - | |
Cca04g01327 | 820 | Pfam | Protein tyrosine and serine/threonine kinase | 507 | 772 | IPR001245 | GO:0004672|GO:0006468 | |
Cca04g01327 | 820 | PANTHER | CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN | 32 | 814 | - | - | |
Cca04g01327 | 820 | CDD | PAN_AP_plant | 342 | 424 | - | - | |
Cca04g01327 | 820 | SMART | ntp_6 | 344 | 423 | IPR003609 | - | |
Cca04g01327 | 820 | SMART | serkin_6 | 504 | 775 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca04g01327 | 820 | ProSiteProfiles | PAN/Apple domain profile. | 341 | 424 | IPR003609 | - | |
Cca04g01327 | 820 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 625 | 637 | IPR008271 | GO:0004672|GO:0006468 | |
Cca04g01327 | 820 | Pfam | D-mannose binding lectin | 73 | 178 | IPR001480 | - | |
Cca04g01327 | 820 | Gene3D | - | 18 | 149 | IPR036426 | - | |
Cca04g01327 | 820 | Pfam | S-locus glycoprotein domain | 210 | 320 | IPR000858 | GO:0048544 | |
Cca04g01327 | 820 | CDD | STKc_IRAK | 510 | 772 | - | - | |
Cca04g01327 | 820 | PIRSF | SRK | 1 | 820 | IPR024171 | GO:0004674 | |
Cca04g01327 | 820 | ProSiteProfiles | Protein kinase domain profile. | 504 | 781 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca04g01327 | 820 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 | 32 | 814 | - | - | |
Cca04g01327 | 820 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 74 | 183 | IPR036426 | - | |
Cca04g01327 | 820 | Gene3D | Transferase(Phosphotransferase) domain 1 | 580 | 783 | - | - | |
Cca04g01327 | 820 | Gene3D | Phosphorylase Kinase; domain 1 | 465 | 579 | - | - | |
Cca04g01327 | 820 | SMART | blect_4 | 30 | 152 | IPR001480 | - | |
Cca04g01327 | 820 | Pfam | PAN-like domain | 341 | 409 | IPR003609 | - | |
Cca04g01327 | 820 | ProSiteProfiles | Bulb-type lectin domain profile. | 24 | 146 | IPR001480 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g01327 | Cca-Chr4 | 16936795 | 16941271 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca04g01327 | 430 | 790 | Receptor kinase-like Gene Family | AT4G23190 | 48.509 | 2.67e-119 | 371 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_DLSV | Cca04g01327 | PK_Tyr_Ser-Thr | 1.1e-47 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g01327 | - | - | gmx:100786696 | 1365.13 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca04g01327 | 04 | 16936795 | 16941271 | Cca04g01327 | 04 | 16936795 | 16941271 | ECH |