Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01325 ATGACCATTCCACTACCTTTCATGCTTGTTATTATGCTTGCCCTTTTCTTCATATCTAAAATTTCCTCCGAAACTTACACCCTCACCCAGTTTCAGTCACTTCCCAGTGGAACCAGAACCACCTTGGTATCCAAAGATGGAACCTTCGAGTTGGGTTTCTTCAGCCCAGGTAGTTCCACAAACCGCTACCTAGGAATCTGGTTCAAAAACATCCCACTAAAAACCGTCGTTTGGGTCGCCAACCGTGACAACCCGATCAACAGCAACACTACCAAGTTAACCATAACCAAAGAAGGAAACCTGGCACTCCTCACCGAAAACGACACCGTTCACTGGTCAACAAACGCAAGAGCAAAAGCGATCAACGTCAACGTTGTAGCACAACTCTTGGATTCAGGCAACTTGGTCCTAAGAGACGAGAAAGACAACTATTCTCAAAACTTGTTGTGGCAAAGCTTCGACCATCCTTCGGACACGCTTTTACCAGGAATGAAACTAGGATGGGAAGTAACAAAGGATGTTAATCTCAACAGGTACCTCACTGCATGGAACAACTGGGAAGACCCATCTTCGAGTCTCTTCACTTATGGCTTCTCGTTAAGCAATATTCCTGAAACGCAGATATTGAATGGCTCATCAATGCTCTACAGAAGTGGCCCTTACAATGGCGTTCGATTGAGCGCTGTACCCTCGTTGAGGCACCGTCCAATGTTCAATTACGATTACGATTGCGACATGACCGACACCAACGAGTGTTATTACCAATTCAAACCCTGGAATAACTCACTGATTTCCAGAATGACCCTCAACCAAACCGTTTACGCTCTCCAGCAATTGTTTTGGGTGGAAACAACTCAAGAGTGGAACTTGTCTTCAACTATTCCGAGAGATGACTGTGACAACTACAAGCGATGTGGCGCTTTCGGGATCTGCGCCGTGATGGATAACTCTAAGTCTCCATCGTGCGAGTGCTTGAGTGGGTTTGAGCCAAAATCGCCGCAAAACTGGGTTGCGGGAAATTGGAGTGAAGGGTGCGTGCGTAGTAGCAAAAGATGGAGGTGTAGGGAGACAAACAGTGACGGTTTCGTCGTGCTGCGTAACGTGAAGGTCCCAGACACAAGAACATGTTGGATTAATAGAAGCATGACACTCGAGGAATGTAAGGTGAAGTGCTGGGAAAATTGTTCGTGTACGGCTTATGCTAACTCAGCAATCGTTGGAAAGGGAAGTGGTTGTATCCTATGGTTCGGGGATTTATTGGACATGAAACAGCTTCCGGATACAGCGCAAGATCTGTATGTTAGATTGGATATCTCCCAAATGGCGAATCGAGAAGCAAAAGTTAGTTCGGCGAAAATGGTGATTATGGTCACAAGCATCATCTCATCTGTTATTACTATGCTTGTAATTTTAGCCTTCATTTACAGGAGAAGGAAAGCCAAAGATATCGTCAAGACAAAAGTAGAAAGAAATGATAGCAACCAAGAAGATTTGGAACTACCTTTGTATGACTTTGATACAATAGCATGTTCCACTAATGACTTCTCAAGAGACAACAAGCTTGGACAAGGCGGTTTTGGTCCAGTATACAAAGGCACACTACCAAATGGAAGAGATATTGCAGTTAAAAGACTTTCACAGTCATCTACACAGGGATTAATAGAATTTAAGAACGAGGTTATATTTTGTTCAAAACTTCAACATCGAAATCTTGTTAAGGTCCTTGGTTGTTGCATTGAAGAGCAAGAGAAATTACTTATCTATGAGTACATGTCTAATAAAAGCTTAGACTTCTTTCTTTTTGATTATTCTCAAAGCAAACTTCTAGATTGGTCCAAGCGATTTAACATTATAAACGGAATTGCTAGAGGACTTCTTTACCTTCACCAAGATTCTAGATTGAGGATCATACATAGAGATTTAAAAGCAAGTAATATTTTGCTAGATGATGACATGAATCCAAAAATATCTGATTTTGGATTAGCTCGAATGTGTGGAGGTGATCAGATTGAAGGAAGTACAAGTAGAGTTGTTGGTACACATGGTTATATGGCACCTGAATATGCAATTGATGGAGTATTCTCCATCAAATCTGACGTATATAGCTTTGGCGTTTTACTACTCGAGGTTTTAAGCGGAAAGAAAAACAAAGGGCTTTCCTACCCTGACCGAAGCTACAATCTTATTGGACATGCATGGAGTTTATGGAAAGAGAGCATCCCAATGGAATTCATTGATAGTTGCTTGGGAGACTCATACGTCGTATCTGAAGCCATACGTTGCATTCATATTGGTCTTTTATGTGTGCAATATCAATCTGATGATAGACCAAATATGACATCTATAATGACCATGTTAACTAGTGAAAGTGCTTTACCACAACCAAAAGAGCCACTTTTCTTAAATAAAATGGTTTCACTTGAGGAGGATTTTGGGCAAAACATGCATTATTCAACCAATGAAGTAACCATCTCAAAGTTGGAACCAAGATAA 2493 0.4152 MTIPLPFMLVIMLALFFISKISSETYTLTQFQSLPSGTRTTLVSKDGTFELGFFSPGSSTNRYLGIWFKNIPLKTVVWVANRDNPINSNTTKLTITKEGNLALLTENDTVHWSTNARAKAINVNVVAQLLDSGNLVLRDEKDNYSQNLLWQSFDHPSDTLLPGMKLGWEVTKDVNLNRYLTAWNNWEDPSSSLFTYGFSLSNIPETQILNGSSMLYRSGPYNGVRLSAVPSLRHRPMFNYDYDCDMTDTNECYYQFKPWNNSLISRMTLNQTVYALQQLFWVETTQEWNLSSTIPRDDCDNYKRCGAFGICAVMDNSKSPSCECLSGFEPKSPQNWVAGNWSEGCVRSSKRWRCRETNSDGFVVLRNVKVPDTRTCWINRSMTLEECKVKCWENCSCTAYANSAIVGKGSGCILWFGDLLDMKQLPDTAQDLYVRLDISQMANREAKVSSAKMVIMVTSIISSVITMLVILAFIYRRRKAKDIVKTKVERNDSNQEDLELPLYDFDTIACSTNDFSRDNKLGQGGFGPVYKGTLPNGRDIAVKRLSQSSTQGLIEFKNEVIFCSKLQHRNLVKVLGCCIEEQEKLLIYEYMSNKSLDFFLFDYSQSKLLDWSKRFNIINGIARGLLYLHQDSRLRIIHRDLKASNILLDDDMNPKISDFGLARMCGGDQIEGSTSRVVGTHGYMAPEYAIDGVFSIKSDVYSFGVLLLEVLSGKKNKGLSYPDRSYNLIGHAWSLWKESIPMEFIDSCLGDSYVVSEAIRCIHIGLLCVQYQSDDRPNMTSIMTMLTSESALPQPKEPLFLNKMVSLEEDFGQNMHYSTNEVTISKLEPR 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01325 830 Pfam Protein tyrosine and serine/threonine kinase 518 784 IPR001245 GO:0004672|GO:0006468
Cca04g01325 830 ProSiteProfiles PAN/Apple domain profile. 354 437 IPR003609 -
Cca04g01325 830 ProSiteProfiles Bulb-type lectin domain profile. 25 150 IPR001480 -
Cca04g01325 830 ProSiteProfiles Protein kinase domain profile. 515 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01325 830 SMART serkin_6 515 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01325 830 Pfam D-mannose binding lectin 75 183 IPR001480 -
Cca04g01325 830 CDD B_lectin 33 156 IPR001480 -
Cca04g01325 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Cca04g01325 830 Gene3D - 19 153 IPR036426 -
Cca04g01325 830 Pfam PAN-like domain 354 422 IPR003609 -
Cca04g01325 830 SUPERFAMILY Protein kinase-like (PK-like) 498 799 IPR011009 -
Cca04g01325 830 CDD PAN_AP_plant 355 436 - -
Cca04g01325 830 Pfam S-locus glycoprotein domain 216 332 IPR000858 GO:0048544
Cca04g01325 830 Gene3D Phosphorylase Kinase; domain 1 476 590 - -
Cca04g01325 830 Pfam Domain of unknown function (DUF3403) 787 830 IPR021820 GO:0004674
Cca04g01325 830 CDD STKc_IRAK 521 787 - -
Cca04g01325 830 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 189 IPR036426 -
Cca04g01325 830 Gene3D Transferase(Phosphotransferase) domain 1 591 797 - -
Cca04g01325 830 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 14 828 - -
Cca04g01325 830 SMART ntp_6 357 436 IPR003609 -
Cca04g01325 830 SMART blect_4 33 156 IPR001480 -
Cca04g01325 830 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 828 - -
Cca04g01325 830 ProSiteProfiles EGF-like domain profile. 295 334 IPR000742 -
Cca04g01325 830 PIRSF SRK 1 830 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01325 Cca-Chr4 16913555 16921716 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01325 443 808 Receptor kinase-like Gene Family AT4G23190 52.830 4.75e-131 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01325 PK_Tyr_Ser-Thr 7.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01325 - - gmx:100792537 1142.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01325 04 16913555 16921716 Cca04g01325 04 16913555 16921716 ECH