Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01324 ATGTTCCCTCACCAACACCGCCATTTTCCTCCTCTGCCATTCGCAAAACACAGCTCCAACTCCGTTTTGTTCCCCTACTCTTTGATCCTCTGCCCCGAGAAAATGTACATCGTTCTCCACAAGATCAAAACGCTAATTGAAGATTACTTCAATGGAAAAAGTAAGTTCAATCTGCTCGTGCAAATCGAAACCGTCGCCGACACCTTCCACAGGCGCACCGGAGAAATCTCCACGCTCCTCGATGTTTTCCCTCTCCAAGAACTCCACCCAAACAACCAGATCAAGCACGAGATCGTTCCCGATCAAGCGCATCTCTCTTTGATTTTTGACAAACTAGAGATTCGCGACGCGTCCAGTTGCACAGCAGAGATTGAGAGCCTCGAGAAAGAGATTATCAATGGGAGCGGGGAACAATCCAAAACGGACCTCGTCACGTTGATCGGCCTCATTCGTTTTGCCAAGTGCGTTCTCTTTAGCGCGTCAACACCGTCGCCGAGTGCCTCCGTTCTGCGGCGGAACCAGTCGTCAGAGCTAGCGATTTCGATGCCGGAGAGAGTGAGGGATTCTCAACTACTACCATGGTATGATCAAACACTTTTTGAGGATGAAAACATAAACAAAATGATGGAGACTAAGGAACTTTTCGAGTGGGTCCTGAAGCAACCATGTTTTGAGAAAACATCCTTCATGTTATTCTTAAACAAGTTTGACATATTTGAGAAGAAGATCCTGAAAGTTCCACTTAATGTATGTGAGAGGTTCAAAGATTACCAACCGGTTTCAACAGGGAAACAAGAGATTGAGCATGCATATGATGGTGGGATAGGGTTTGATGCAAACTTTGTTCTTAAATTACCAGAAAATCTGCATGGGGCTGAATGGTTTTCAAAAGCAACTGTTAAGAGGTTCCTTCACGTTGTTAGTTCACCGGATTTGATAAATACCATCAGTGGTATCCTGGATGAGATGTCTCAGTTGGAGGATTCAAAGAAATTTCATGTTTCTTTATATGGGAAGGTGATACTCTGTCTTTCAATAAATAAATACCGATATTGTATGTGTGTAGTTTCTGATTAA 1077 0.4383 MFPHQHRHFPPLPFAKHSSNSVLFPYSLILCPEKMYIVLHKIKTLIEDYFNGKSKFNLLVQIETVADTFHRRTGEISTLLDVFPLQELHPNNQIKHEIVPDQAHLSLIFDKLEIRDASSCTAEIESLEKEIINGSGEQSKTDLVTLIGLIRFAKCVLFSASTPSPSASVLRRNQSSELAISMPERVRDSQLLPWYDQTLFEDENINKMMETKELFEWVLKQPCFEKTSFMLFLNKFDIFEKKILKVPLNVCERFKDYQPVSTGKQEIEHAYDGGIGFDANFVLKLPENLHGAEWFSKATVKRFLHVVSSPDLINTISGILDEMSQLEDSKKFHVSLYGKVILCLSINKYRYCMCVVSD 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01324 358 ProSiteProfiles G-alpha domain profile. 195 335 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca04g01324 358 Pfam G-protein alpha subunit 195 270 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca04g01324 358 PANTHER U BOX DOMAIN-CONTAINING 21 89 - -
Cca04g01324 358 PANTHER U BOX DOMAIN-CONTAINING 92 180 - -
Cca04g01324 358 SMART galpha_1 70 326 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca04g01324 358 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 263 IPR027417 -
Cca04g01324 358 Gene3D - 195 271 IPR027417 -
Cca04g01324 358 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 21 89 - -
Cca04g01324 358 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 92 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01324 Cca-Chr4 16901191 16904213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01324 19 175 U-box Gene Family AT5G01830 35.233 2.21e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01324 K19729 - gmx:100805405 202.986