Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01323 ATGGCTCTTGTTCATGCTACGCTTCTTTTCCCGAACCTACTATTCTTCTTCTTCTCTCAAGTTTCCTATGCAACCGACACCATCACTCATTCTCAACCACTTTCCGATGGCTCCACCTTGGTCTCAAAAGATGGAACCTTCGAGTTGGGTTTCTTCACTCCCGGTAGTTCCACAAACCGCTACGTCGGAATTTGGTTCAAAAATATCCAAACTAGAACCATAGTTTGGGTTGCGAACCGTAACAACCCTACAAAAGACAAGTCCAGCACGTTGTCGCTAACCGAAGAGGGAAACCTCGTACTCCTCAACATAAACCGGTCTCTTGTTTGGTCCACGAATACAACATCAAAAGAACCGGTTTCAAGTCTCGTGGTGCAACTTTTAGACAGCGGGAATTTAGTGATCAGAGATGGAAGCAACGACAAGAATGAAGAGAGTTTTTTGTGGGAGAGTTTTGATCATCCTTGTGACACACTATTACAAGGAATGAAACTAGGGTGGAACCTTAAAACCGGTCTAAACCGGTTTCTAACCGCGTGGAAAAACTGGGATGATCCATCTTCGGGAGATTTTACATCGGGTGTGAAGCTTGGGACCAATCCTGAATTGGCAATATGGAAGGGTTCGGTTGAGTACTATAGAAGTGGTCCATGGAACGGGATTTTCTCTAGTGGGGTATTTGGGTTCAGTCCAAATCCACTTTTTGAATATAAGTACGTCCAAAATGAAGATGAAGTGTACGTGAGGTACACGCTAAAGAATAGTTCTGTGGTTTCGATCATTGTTTTGAACCAAACCCTTTATCTTCGCCAACGCATTACGTGGATTCCCCACACTAGAACTTGGAGTGTGTACCAATCGTTGCCACAGGATAGTTGTGACGTTTATAACGTTTGTGGGGCTTATGGGAGTTGCATGATTAATGGGTCCCCTGTGTGCCAATGCTTAGAGGGGTTCAAGCCAAAATCGGTTCAAAACTGGAATGCAATGGATTGGACACAAGGGTGTGTGCATAAAGAACCGTGGAGTTGTGGGGTTAAGAACAAAGATGGTTTTAGAAGATTTGTGGGGATGAAAATGCCTGATACCACACATTCTTGGATAAATACAAGTATGACACTTGAAGATTGCAAGGCCAAATGCTTGAATATTTGTTCTTGCACTGCTTATGCCAACTTAGACACAAGTGGGGGAGGTAGTGGTTGCTCAATTTGGTTTGGTGATCTTGTTGATTTGAGAGTTTCAGAAAGTGGGCAAGATCTATATGTTCGAATGGCCACTTCAGATACGATTATTTACAATGATGCTAAACATAAGAACTCAAAGAAGGTAGTCTTGATGGTGGCTATCATAGTTTCGTTAGTCGTGATGATGCTAATGGGATTCTCCTACATTTACATGACCAAAACAAAGAAGGAAGAAAACGAAATATGGACAGAGGAGAAAGATGAAGGTGAGCAAGAAAATCTGGAGCTTCCTTTCTTTGACCTTGCTACAATAATTAATGCCACCAATAACTTCTCAATTGTCAACAAGTTGGGTGAAGGTGGTTTTGGGCCTGTATATAAGGGTACAATGCTAGATGGACAAGTGATAGCAGTTAAAAGGCTTTCAAGGAGTTCTGGACAAGGATTGAAAGAATTTAAGAATGAAGTTATATTATGTGCCAAACTTCAACATCGAAATCTTGTTAAGGTTCTTGGTTGTTGCATTGAAGGAGAGGAGAAAATGTTACTCTATGAATATATGCCCAACAAAAGTCTCGATTCATTCATTTTTGATTCAGTTCAAAGTAAACTTTTAGACTGGCCTATGCGCTTTAACATCCTGTGTGCAATTGCTCGAGGACTTATGTATCTTCATCAAGATTCTAGATTAAGAATCATACACAGAGATTTGAAAGCAAGCAATATCTTATTAGATAATAATATGAATCCAAAAATTTCAGATTTTGGTTTAGCTAAAATGTGCGGAGGCGATCAAGTTGAAGGGAATACAAACAGAATTGTTGGAACATATGGTTATATGGCACCTGAATATGCTATTGATGGGTTATTCTCTACAAAATCGGATGTATTTAGCTTTGGTGTATTGTTGTTAGAAATTATCAGTGGAAAGAAAAACCGAACAATTACAAATGAAGGCCACATTGATAATCTTATTGGACATGCATGGAGAATGTGGAAAGAGGGCACTCCAGAACAATTGATTGCTCCAAGTCTAGTGGACTCATGTAAAATATCTGAAGTTATACGTTGCATTCAAGTTGGTCTTTTATGTTTGCAGCATCATCCCGATGATAGGCCAAACATGACATCTGTGATTGTAATGTTGAGTAGTGAAACTATTTTATCTCAACCTAAAGTACCTAGTTTCTTAATTAAAAATATTTCAATTGAAGGCGAGCAATCTTGTGATAGACAAGAGTCTTGCTCAATCAATGAAGTAACTGTCTCATTATTAAATGCTAGATAG 2475 0.3964 MALVHATLLFPNLLFFFFSQVSYATDTITHSQPLSDGSTLVSKDGTFELGFFTPGSSTNRYVGIWFKNIQTRTIVWVANRNNPTKDKSSTLSLTEEGNLVLLNINRSLVWSTNTTSKEPVSSLVVQLLDSGNLVIRDGSNDKNEESFLWESFDHPCDTLLQGMKLGWNLKTGLNRFLTAWKNWDDPSSGDFTSGVKLGTNPELAIWKGSVEYYRSGPWNGIFSSGVFGFSPNPLFEYKYVQNEDEVYVRYTLKNSSVVSIIVLNQTLYLRQRITWIPHTRTWSVYQSLPQDSCDVYNVCGAYGSCMINGSPVCQCLEGFKPKSVQNWNAMDWTQGCVHKEPWSCGVKNKDGFRRFVGMKMPDTTHSWINTSMTLEDCKAKCLNICSCTAYANLDTSGGGSGCSIWFGDLVDLRVSESGQDLYVRMATSDTIIYNDAKHKNSKKVVLMVAIIVSLVVMMLMGFSYIYMTKTKKEENEIWTEEKDEGEQENLELPFFDLATIINATNNFSIVNKLGEGGFGPVYKGTMLDGQVIAVKRLSRSSGQGLKEFKNEVILCAKLQHRNLVKVLGCCIEGEEKMLLYEYMPNKSLDSFIFDSVQSKLLDWPMRFNILCAIARGLMYLHQDSRLRIIHRDLKASNILLDNNMNPKISDFGLAKMCGGDQVEGNTNRIVGTYGYMAPEYAIDGLFSTKSDVFSFGVLLLEIISGKKNRTITNEGHIDNLIGHAWRMWKEGTPEQLIAPSLVDSCKISEVIRCIQVGLLCLQHHPDDRPNMTSVIVMLSSETILSQPKVPSFLIKNISIEGEQSCDRQESCSINEVTVSLLNAR 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01323 824 Pfam Domain of unknown function (DUF3403) 779 824 IPR021820 GO:0004674
Cca04g01323 824 SMART serkin_6 507 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01323 824 Gene3D Transferase(Phosphotransferase) domain 1 583 788 - -
Cca04g01323 824 Gene3D - 19 152 IPR036426 -
Cca04g01323 824 CDD STKc_IRAK 513 778 - -
Cca04g01323 824 CDD PAN_AP_plant 343 426 - -
Cca04g01323 824 SMART ntp_6 347 425 IPR003609 -
Cca04g01323 824 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 33 818 - -
Cca04g01323 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Cca04g01323 824 PIRSF SRK 1 824 IPR024171 GO:0004674
Cca04g01323 824 Gene3D Phosphorylase Kinase; domain 1 466 582 - -
Cca04g01323 824 ProSiteProfiles Protein kinase domain profile. 507 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01323 824 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 186 IPR036426 -
Cca04g01323 824 ProSiteProfiles Bulb-type lectin domain profile. 25 148 IPR001480 -
Cca04g01323 824 ProSiteProfiles EGF-like domain profile. 289 325 IPR000742 -
Cca04g01323 824 Pfam Protein tyrosine and serine/threonine kinase 509 775 IPR001245 GO:0004672|GO:0006468
Cca04g01323 824 Gene3D Hepatocyte Growth Factor 343 426 - -
Cca04g01323 824 CDD B_lectin 31 155 IPR001480 -
Cca04g01323 824 Pfam S-locus glycoprotein domain 213 323 IPR000858 GO:0048544
Cca04g01323 824 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 33 818 - -
Cca04g01323 824 SMART blect_4 31 155 IPR001480 -
Cca04g01323 824 ProSiteProfiles PAN/Apple domain profile. 344 426 IPR003609 -
Cca04g01323 824 Pfam PAN-like domain 344 412 IPR003609 -
Cca04g01323 824 Pfam D-mannose binding lectin 73 181 IPR001480 -
Cca04g01323 824 SUPERFAMILY Protein kinase-like (PK-like) 490 784 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01323 Cca-Chr4 16869262 16873256 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01323 445 796 Receptor kinase-like Gene Family AT4G23230 53.955 1.95e-126 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01323 PK_Tyr_Ser-Thr 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01323 - - gmx:100790436 1431.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01323 04 16869262 16873256 Cca04g01323 04 16869262 16873256 ECH