Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01322 ATGCCAATTCTAAGAATTCTTCCTCCTATGCTTGTTATTTCTAATCTATTATTATCGTTTTTGTGTCAAATTTCTTCTGCTTCTGATTCAATCACTCTGTCTCAACCACTTCACGATGGCAACACTATAATTTCCAATGATTCAACCTTTGAGATGGGTTTCTTCACTCCCGGTAGTTCTGGAAATCGTTACGTTGGAATATGGTACAAAAATATTCCCGTTATAAGGGTTGTTTGGGTTGCCAACCGTGACAACCCCATCAAAGACAATTCCACCTCGTTGATTCTAACCAAAGAGGGTACCCTCATGCTTCTCAGCAAGAACAACTCTCTTGTTTGGTCAACAAACACGACATCAGCACCAAAGGTTTCGATTTCGAGTCCAATTGTGCAGCTCCTAGACACGGGAAACTTGGTGATTAGAGATGAAAAGGGTGGCAATAGCAACATGGAAGagggttttctatggcaaagctttgaccatccttgtgatactttgttatccggaatgaagctaggatgggacctgaaaaagggtcttaatcgacgtcttgtttcgtggaggaattgggatgacccatcttctggAGACTTTGTTCAAGGTATAGTTCCTGGCGTCAATCCTGAAATGGTAATATGGAAAGACTCTGTTGAGTTCTACAGGAGTGGACCATGGACTGGGTCTCGTTCCACAGGAATATTTGGGTTGAGGACCAACCCTCTTTATGATTACGAATTCATCAACGATGGAAATGAGGTGTATTACTCATACACACTCAAGAACAGTTCTGTGGTTTCCCTAGTTGTTATGAACCAATCCATTTATCTTCGTCAACGCCTCACGTGGATTCCTCAAACCAAAACATGGAGTGTGTATCAGTCCTTACCACAAGACAATTGTGATTTTTACAACGTTTGTGGCCCAAACGGGAATTGCTTCATTGATGGGTCTCCTATGTGCCAATGCTTGGAGGGGTTCGAGCCAAAGTCACCGCAACATTGGAATGCCACGGATTGGTCACAAGGGTGTGTGCGCAGTGAAGCGTGGAGTTGCAAGGTGAAAAACAAAGATGGGTTTAGAAAAATTGTTGGGGCCAAGTTGCCAGATACTACACGTTCTTGGATTAATCAAAGTATGTCACTTGATGATTGCAAGGCCAAATGCATGGAAAATTGTTCTTGCACGGCTTATTCAAACTTGGACATTAGTAAAGAAGGTTGTTCTGTTTGGTTTGGTGATCTTCTTGACTTGAGAGTTTCTCATAGTGGGCAAGATTTATATGTTCGAATGGCTACAACAGATATAGTTATAAATAATAATGCAGATGCTAAACATGGCCATCGGAGGAAGGTTGTCTTGGCAGTTACACTCACTGTTTTTGGGGTCATTATGATGATGTTGGCGTTCACCTACTTGTACAAGAACAAAAAGAAGTGGAGAGAAAGAACCAACTCAACCGAAGAGATAGATGAAGAAAAACAAGAAGATTTAGAGCTTCCTTTCTTTGATTTTGCTACAATAGCCAATGCAACCAATAACTTTTCAGATAACAATAAGCTTGGTGAAGGTGGCTTTGGCCCCGTGTATAAGGGTACTTTGTTAGATGGACAAGAGattgcagtgaaaagactttcaagtagttctcgacagggattgaaagaatttaagaatgaagttatattgtgtgcaaaacttcagcaccgaaatcttgttaaggttcttggttgttgccttgaaggagaagagagaatgttactttatgagtacatgcccaacaaaagccttgatTCATTTCTTTTTGATTCAATTAAAAGAAAAGAATTAGATTGGGCTATGCGATTTAAAATCTTAAATGCAATTGCTCGGGGTCTGCTTTATCTCCATCAAGATTCTAGATTAAGAATTATACATAGAGATTTAAAAGCAAGTAATATTTTGTTAGACAATGACATGAACCCAAAGATTTCAGATTTTGGTTTGGCAAGAATGTGTGGAGGTGATCAAGTTGAAGGGAATACAAGTAGAATAGTTGGGACGTACGGTTATATGGCACCTGAATATGCAAGTGATGGGTTATTCTCTACAAAGTCAGATGCATTCAGTTTTGGTGTTTTATTACTAGAAATTGTTAGTGGAAAGAAAAACAAAGCACTTACCTACAAAGATGACGATAATAATATTATTGCCCATGCATGGAGATGGTGGAGAGAAGGCAACCCGATGGAATTTATTGATGCTTATTTGGAAAACTCGTGTAATATACTTGAAGCAATACGATGCATTCAAATTGGTCTTTTATGTCTACAACATCATCCTGAAGATAGGCCAAACATGTCCTCTGTAGTTGTAATGTTAAGTAGTGAAATTGATTTACCTCAACCAAAAGAACCTGGATTCTTACTAAAAAAGGTCTCTAATGAAGGGGAACAATCTTCTACAAGACAAACATCTTCAATTAATGATGTAACTATCTCACTTTTAAATGCTAGATAA 2493 0.341 MPILRILPPMLVISNLLLSFLCQISSASDSITLSQPLHDGNTIISNDSTFEMGFFTPGSSGNRYVGIWYKNIPVIRVVWVANRDNPIKDNSTSLILTKEGTLMLLSKNNSLVWSTNTTSAPKVSISSPIVQLLDTGNLVIRDEKGGNSNMEEGFLWQSFDHPCDTLLSGMKLGWDLKKGLNRRLVSWRNWDDPSSGDFVQGIVPGVNPEMVIWKDSVEFYRSGPWTGSRSTGIFGLRTNPLYDYEFINDGNEVYYSYTLKNSSVVSLVVMNQSIYLRQRLTWIPQTKTWSVYQSLPQDNCDFYNVCGPNGNCFIDGSPMCQCLEGFEPKSPQHWNATDWSQGCVRSEAWSCKVKNKDGFRKIVGAKLPDTTRSWINQSMSLDDCKAKCMENCSCTAYSNLDISKEGCSVWFGDLLDLRVSHSGQDLYVRMATTDIVINNNADAKHGHRRKVVLAVTLTVFGVIMMMLAFTYLYKNKKKWRERTNSTEEIDEEKQEDLELPFFDFATIANATNNFSDNNKLGEGGFGPVYKGTLLDGQEIAVKRLSSSSRQGLKEFKNEVILCAKLQHRNLVKVLGCCLEGEERMLLYEYMPNKSLDSFLFDSIKRKELDWAMRFKILNAIARGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGLARMCGGDQVEGNTSRIVGTYGYMAPEYASDGLFSTKSDAFSFGVLLLEIVSGKKNKALTYKDDDNNIIAHAWRWWREGNPMEFIDAYLENSCNILEAIRCIQIGLLCLQHHPEDRPNMSSVVVMLSSEIDLPQPKEPGFLLKKVSNEGEQSSTRQTSSINDVTISLLNAR 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01322 830 CDD PAN_AP_plant 350 431 - -
Cca04g01322 830 PIRSF SRK 2 830 IPR024171 GO:0004674
Cca04g01322 830 ProSiteProfiles Protein kinase domain profile. 514 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01322 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Cca04g01322 830 SMART blect_4 34 162 IPR001480 -
Cca04g01322 830 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 193 IPR036426 -
Cca04g01322 830 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 36 824 - -
Cca04g01322 830 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 36 824 - -
Cca04g01322 830 SMART serkin_6 514 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01322 830 Pfam S-locus glycoprotein domain 220 330 IPR000858 GO:0048544
Cca04g01322 830 Gene3D Transferase(Phosphotransferase) domain 1 590 794 - -
Cca04g01322 830 Gene3D Phosphorylase Kinase; domain 1 473 589 - -
Cca04g01322 830 CDD STKc_IRAK 520 785 - -
Cca04g01322 830 ProSiteProfiles Bulb-type lectin domain profile. 28 153 IPR001480 -
Cca04g01322 830 Pfam D-mannose binding lectin 77 188 IPR001480 -
Cca04g01322 830 Pfam PAN-like domain 351 417 IPR003609 -
Cca04g01322 830 Pfam Domain of unknown function (DUF3403) 786 830 IPR021820 GO:0004674
Cca04g01322 830 SMART ntp_6 354 430 IPR003609 -
Cca04g01322 830 Gene3D Hepatocyte Growth Factor 350 429 - -
Cca04g01322 830 CDD B_lectin 34 162 IPR001480 -
Cca04g01322 830 Pfam Protein tyrosine and serine/threonine kinase 517 784 IPR001245 GO:0004672|GO:0006468
Cca04g01322 830 Gene3D - 22 159 IPR036426 -
Cca04g01322 830 ProSiteProfiles PAN/Apple domain profile. 351 431 IPR003609 -
Cca04g01322 830 ProSiteProfiles EGF-like domain profile. 296 332 IPR000742 -
Cca04g01322 830 SUPERFAMILY Protein kinase-like (PK-like) 497 785 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01322 Cca-Chr4 16856047 16860910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01322 463 830 Receptor kinase-like Gene Family AT4G23150 52.533 7.02e-132 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01322 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01322 - - gmx:100790436 1198.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01322 04 16856047 16860910 Cca04g01322 04 16856047 16860910 ECH