Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01321 ATGTCTATTTCCACCCTCATAGTTGCTATAGCCAACCTACTTTTACTCCTCTCAAAAGCTTCCTCAACCGACACCCTCACCCTCTCACAATCCCTCCCCGATGGCACCACCTTAGTCTCCAAAGACGAAACCTTCGAGTTGGGTTTCTTCTCCCTAAGAAACCCCACAAACCGTTACCTAGGAATCTGGTTCAAAAACATTCCAATAAAAACCGTTGTCTGGGTCGCCAACCGTGACCACCCTCTCAAAGACAACACCACCAAGTTGACCATAAGCAACGAGGGAAACCTCGTCCTCTTAACTAAAGACGGCACCGTTCATTGGTCAGCAAACACAACAACAAAGCCTCTGAGACCCATTCTGCAGCTCTTAAACACTGGAAACCTAGTACTTCGCAACGAAaatgatgacaataataataatagtgacaatacaaataacagtgacaacaacgatgagaacgaGGAAAAGTTCCTCTGGCAAAGCTTTGACTACCCTGGTGACACATTGTTACCAGGAATGAAACTTGGATGGAATAGAAAAACCGGTTTGAATCTATTTGTAACCGCTTGGAAGAACTGGGATGACCCTTCTCCAGGGAACTTCACATGGGGAATCACAATCAACAACAACCCCGAAATGGTTCTTTGGAAGGGTTCATTCAAGTACCATAGGAGTGGTCCTTGGAACGGTGTTAGGTTCAGTGGCGCATTCGCGGGTTCAAATAGGTTAACCACTCACCCTCTCTTCGTTTACAAATTAATCAACAACGAGAACGAAGTGTACTACTCGTACAGCTCCACCAACAAGTCCGTGATCTCAATAGTTGTCATGAACCAAACCCTTTTCCGTCGCCAACGCATCATTTGGATCCCCGAAAACGGAACATGGAGGCTCTTCCAAACCGCTCCAAGGGACATTTGCGACACTTACAATCCGTGTGGCTCTTACGCGAATTGCATGGTTGATTCATCGCCGGTGTGCCAGTGTTTGGAAGGGTTTGAACCGAAATCTTCGGAGAGTACTATGGACTTGTCCCAAGGGTGTGTGAGAAGTGAACCGTGGAGGTGCAAGGAGATAGAGAAAGATGGGTTTAGAAGATTTGTGGGGTTGAAGTTTCCGGATACCACGAATTCTTGGGTTAATCGAAGCATGACGCTGGAGGAATGCAGGAACAAGTGCTGGGAAAATTGTTCGTGCACAGCTTATGCGAACTTGGACATAAGAGGAGAAGGAAGTGGATGTTCCATTTGGTTCGGTGATCTTGTTGATTTGAAAGTTATTTCGCAAAGTGGGCAATATCTCTATGTTCGTATGGCTGATTCAAGAACAGATGCAAGTGACCGTAAGAAAATGGCACTCTTGGTAGGTACCACCGTTCCTCCCGTAGTTCTCGTTATACTATTCGCAATCTTTTACCATTACAGAAGGAAAAGAAAGTATGAAGGAGAAAACATGTCAGTAGTAAAGAAAGATGAAGCTGGTGGAGAAGAAGCTGATAGTATGGAACTGCCGTTGTTTGATCTTGCTACAATAGTTAATGCCACCAACAACTTCTCAACTGACAACAAACTTGGGCAGGGTGGATTCGGGCCTGTATACAAGGGAGTATTGGTTGACGGACAAGAAATTGCTGTCAAAAGACTATCAAGGAGTTCAGGACAAGGATTAACAGAATTTAAGAATGAAGTTATATTGTGTGCTAAACTTCAACACCGAAACCTTGTTAAAGTTCTTGGTTGTTGTATTGAAGGAGAAGAGAAAATGCTTCTATATGAATACATGCTCAACAAAAGCCTAGATTCATTTATTTTTGATGACACTAAAAGCAAACTGCTAGATTGGCCTAAGCGTTTCAACATTATCTGTGGAATTGCTCGAGGTCTTCTTTATCTTCATCAAGATTCTAGATTAAGGATAATTCATAGAGACCTCAAAGCAAGCAATGTTTTGCTTGATGACCAACTAAATCCAAAAATATCAGATTTTGGTATTGCTAGAATTTTTGGAGGAGATCAAACTGAAGGAAATACACAAAGAGTAGTTGGAACTTATGGGTACATGGCACCAGAATATGCAGCTGATGGTCTTTTTTCAATCAAATCTGATGTTTTCAGTTTTGGTATTTTGTTGCTGGAGATTATCAGTGGAAAGAGAAATAGAGGTTTTTATGTTGAAAGCCACTGTCCTAACCTTGTCACTCATGCATGGAGTCTGTGGAAAGAGGGCAGGGCTATAGAAATGTTTGACTCAAACATTGAGGGCTCTTGTGTTCTATCAGAGGTATTGCGTTGCATCCATGTCGGTCTCTTATGTATCCAGCAACATGCAGAGGATAGGCCTGCCATGCCTTCTGTGGTTCTAATGTTGGGGAGTGAGAGTGAATTGGCTGAGCCTAAAGAACCAGGTTTCTATGTAAAGAATGATCAAGGTGCAATAACTCCCTTCTCAAGTCGAAGTGATACAGTCTCAACCAATGAAATAACAATCACTTTATTAGAAGCCAGATGA 2511 0.419 MSISTLIVAIANLLLLLSKASSTDTLTLSQSLPDGTTLVSKDETFELGFFSLRNPTNRYLGIWFKNIPIKTVVWVANRDHPLKDNTTKLTISNEGNLVLLTKDGTVHWSANTTTKPLRPILQLLNTGNLVLRNENDDNNNNSDNTNNSDNNDENEEKFLWQSFDYPGDTLLPGMKLGWNRKTGLNLFVTAWKNWDDPSPGNFTWGITINNNPEMVLWKGSFKYHRSGPWNGVRFSGAFAGSNRLTTHPLFVYKLINNENEVYYSYSSTNKSVISIVVMNQTLFRRQRIIWIPENGTWRLFQTAPRDICDTYNPCGSYANCMVDSSPVCQCLEGFEPKSSESTMDLSQGCVRSEPWRCKEIEKDGFRRFVGLKFPDTTNSWVNRSMTLEECRNKCWENCSCTAYANLDIRGEGSGCSIWFGDLVDLKVISQSGQYLYVRMADSRTDASDRKKMALLVGTTVPPVVLVILFAIFYHYRRKRKYEGENMSVVKKDEAGGEEADSMELPLFDLATIVNATNNFSTDNKLGQGGFGPVYKGVLVDGQEIAVKRLSRSSGQGLTEFKNEVILCAKLQHRNLVKVLGCCIEGEEKMLLYEYMLNKSLDSFIFDDTKSKLLDWPKRFNIICGIARGLLYLHQDSRLRIIHRDLKASNVLLDDQLNPKISDFGIARIFGGDQTEGNTQRVVGTYGYMAPEYAADGLFSIKSDVFSFGILLLEIISGKRNRGFYVESHCPNLVTHAWSLWKEGRAIEMFDSNIEGSCVLSEVLRCIHVGLLCIQQHAEDRPAMPSVVLMLGSESELAEPKEPGFYVKNDQGAITPFSSRSDTVSTNEITITLLEAR 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01321 836 Pfam Protein tyrosine and serine/threonine kinase 521 785 IPR001245 GO:0004672|GO:0006468
Cca04g01321 836 Pfam PAN-like domain 361 425 IPR003609 -
Cca04g01321 836 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 31 829 - -
Cca04g01321 836 MobiDBLite consensus disorder prediction 131 153 - -
Cca04g01321 836 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 31 829 - -
Cca04g01321 836 SMART blect_4 29 166 IPR001480 -
Cca04g01321 836 Gene3D Phosphorylase Kinase; domain 1 482 594 - -
Cca04g01321 836 MobiDBLite consensus disorder prediction 131 148 - -
Cca04g01321 836 SUPERFAMILY Protein kinase-like (PK-like) 502 790 IPR011009 -
Cca04g01321 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Cca04g01321 836 ProSiteProfiles EGF-like domain profile. 304 340 IPR000742 -
Cca04g01321 836 CDD PAN_AP_plant 363 440 - -
Cca04g01321 836 CDD STKc_IRAK 525 790 - -
Cca04g01321 836 Pfam S-locus glycoprotein domain 225 338 IPR000858 GO:0048544
Cca04g01321 836 Pfam Domain of unknown function (DUF3403) 793 836 IPR021820 GO:0004674
Cca04g01321 836 Gene3D - 18 163 IPR036426 -
Cca04g01321 836 PIRSF SRK 1 836 IPR024171 GO:0004674
Cca04g01321 836 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Cca04g01321 836 ProSiteProfiles Protein kinase domain profile. 519 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01321 836 ProSiteProfiles PAN/Apple domain profile. 357 440 IPR003609 -
Cca04g01321 836 Pfam D-mannose binding lectin 71 192 IPR001480 -
Cca04g01321 836 Gene3D Transferase(Phosphotransferase) domain 1 595 803 - -
Cca04g01321 836 CDD B_lectin 29 166 IPR001480 -
Cca04g01321 836 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 197 IPR036426 -
Cca04g01321 836 SMART serkin_6 519 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01321 836 SMART ntp_6 360 439 IPR003609 -
Cca04g01321 836 Gene3D Hepatocyte Growth Factor 358 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01321 Cca-Chr4 16759868 16825926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01321 454 808 Receptor kinase-like Gene Family AT4G23230 54.494 2.98e-127 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01321 PK_Tyr_Ser-Thr 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01321 - - gmx:100794112 1318.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01321 04 16759868 16825926 Cca04g01321 04 16759868 16825926 ECH