Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g01321 | ATGTCTATTTCCACCCTCATAGTTGCTATAGCCAACCTACTTTTACTCCTCTCAAAAGCTTCCTCAACCGACACCCTCACCCTCTCACAATCCCTCCCCGATGGCACCACCTTAGTCTCCAAAGACGAAACCTTCGAGTTGGGTTTCTTCTCCCTAAGAAACCCCACAAACCGTTACCTAGGAATCTGGTTCAAAAACATTCCAATAAAAACCGTTGTCTGGGTCGCCAACCGTGACCACCCTCTCAAAGACAACACCACCAAGTTGACCATAAGCAACGAGGGAAACCTCGTCCTCTTAACTAAAGACGGCACCGTTCATTGGTCAGCAAACACAACAACAAAGCCTCTGAGACCCATTCTGCAGCTCTTAAACACTGGAAACCTAGTACTTCGCAACGAAaatgatgacaataataataatagtgacaatacaaataacagtgacaacaacgatgagaacgaGGAAAAGTTCCTCTGGCAAAGCTTTGACTACCCTGGTGACACATTGTTACCAGGAATGAAACTTGGATGGAATAGAAAAACCGGTTTGAATCTATTTGTAACCGCTTGGAAGAACTGGGATGACCCTTCTCCAGGGAACTTCACATGGGGAATCACAATCAACAACAACCCCGAAATGGTTCTTTGGAAGGGTTCATTCAAGTACCATAGGAGTGGTCCTTGGAACGGTGTTAGGTTCAGTGGCGCATTCGCGGGTTCAAATAGGTTAACCACTCACCCTCTCTTCGTTTACAAATTAATCAACAACGAGAACGAAGTGTACTACTCGTACAGCTCCACCAACAAGTCCGTGATCTCAATAGTTGTCATGAACCAAACCCTTTTCCGTCGCCAACGCATCATTTGGATCCCCGAAAACGGAACATGGAGGCTCTTCCAAACCGCTCCAAGGGACATTTGCGACACTTACAATCCGTGTGGCTCTTACGCGAATTGCATGGTTGATTCATCGCCGGTGTGCCAGTGTTTGGAAGGGTTTGAACCGAAATCTTCGGAGAGTACTATGGACTTGTCCCAAGGGTGTGTGAGAAGTGAACCGTGGAGGTGCAAGGAGATAGAGAAAGATGGGTTTAGAAGATTTGTGGGGTTGAAGTTTCCGGATACCACGAATTCTTGGGTTAATCGAAGCATGACGCTGGAGGAATGCAGGAACAAGTGCTGGGAAAATTGTTCGTGCACAGCTTATGCGAACTTGGACATAAGAGGAGAAGGAAGTGGATGTTCCATTTGGTTCGGTGATCTTGTTGATTTGAAAGTTATTTCGCAAAGTGGGCAATATCTCTATGTTCGTATGGCTGATTCAAGAACAGATGCAAGTGACCGTAAGAAAATGGCACTCTTGGTAGGTACCACCGTTCCTCCCGTAGTTCTCGTTATACTATTCGCAATCTTTTACCATTACAGAAGGAAAAGAAAGTATGAAGGAGAAAACATGTCAGTAGTAAAGAAAGATGAAGCTGGTGGAGAAGAAGCTGATAGTATGGAACTGCCGTTGTTTGATCTTGCTACAATAGTTAATGCCACCAACAACTTCTCAACTGACAACAAACTTGGGCAGGGTGGATTCGGGCCTGTATACAAGGGAGTATTGGTTGACGGACAAGAAATTGCTGTCAAAAGACTATCAAGGAGTTCAGGACAAGGATTAACAGAATTTAAGAATGAAGTTATATTGTGTGCTAAACTTCAACACCGAAACCTTGTTAAAGTTCTTGGTTGTTGTATTGAAGGAGAAGAGAAAATGCTTCTATATGAATACATGCTCAACAAAAGCCTAGATTCATTTATTTTTGATGACACTAAAAGCAAACTGCTAGATTGGCCTAAGCGTTTCAACATTATCTGTGGAATTGCTCGAGGTCTTCTTTATCTTCATCAAGATTCTAGATTAAGGATAATTCATAGAGACCTCAAAGCAAGCAATGTTTTGCTTGATGACCAACTAAATCCAAAAATATCAGATTTTGGTATTGCTAGAATTTTTGGAGGAGATCAAACTGAAGGAAATACACAAAGAGTAGTTGGAACTTATGGGTACATGGCACCAGAATATGCAGCTGATGGTCTTTTTTCAATCAAATCTGATGTTTTCAGTTTTGGTATTTTGTTGCTGGAGATTATCAGTGGAAAGAGAAATAGAGGTTTTTATGTTGAAAGCCACTGTCCTAACCTTGTCACTCATGCATGGAGTCTGTGGAAAGAGGGCAGGGCTATAGAAATGTTTGACTCAAACATTGAGGGCTCTTGTGTTCTATCAGAGGTATTGCGTTGCATCCATGTCGGTCTCTTATGTATCCAGCAACATGCAGAGGATAGGCCTGCCATGCCTTCTGTGGTTCTAATGTTGGGGAGTGAGAGTGAATTGGCTGAGCCTAAAGAACCAGGTTTCTATGTAAAGAATGATCAAGGTGCAATAACTCCCTTCTCAAGTCGAAGTGATACAGTCTCAACCAATGAAATAACAATCACTTTATTAGAAGCCAGATGA | 2511 | 0.419 | MSISTLIVAIANLLLLLSKASSTDTLTLSQSLPDGTTLVSKDETFELGFFSLRNPTNRYLGIWFKNIPIKTVVWVANRDHPLKDNTTKLTISNEGNLVLLTKDGTVHWSANTTTKPLRPILQLLNTGNLVLRNENDDNNNNSDNTNNSDNNDENEEKFLWQSFDYPGDTLLPGMKLGWNRKTGLNLFVTAWKNWDDPSPGNFTWGITINNNPEMVLWKGSFKYHRSGPWNGVRFSGAFAGSNRLTTHPLFVYKLINNENEVYYSYSSTNKSVISIVVMNQTLFRRQRIIWIPENGTWRLFQTAPRDICDTYNPCGSYANCMVDSSPVCQCLEGFEPKSSESTMDLSQGCVRSEPWRCKEIEKDGFRRFVGLKFPDTTNSWVNRSMTLEECRNKCWENCSCTAYANLDIRGEGSGCSIWFGDLVDLKVISQSGQYLYVRMADSRTDASDRKKMALLVGTTVPPVVLVILFAIFYHYRRKRKYEGENMSVVKKDEAGGEEADSMELPLFDLATIVNATNNFSTDNKLGQGGFGPVYKGVLVDGQEIAVKRLSRSSGQGLTEFKNEVILCAKLQHRNLVKVLGCCIEGEEKMLLYEYMLNKSLDSFIFDDTKSKLLDWPKRFNIICGIARGLLYLHQDSRLRIIHRDLKASNVLLDDQLNPKISDFGIARIFGGDQTEGNTQRVVGTYGYMAPEYAADGLFSIKSDVFSFGILLLEIISGKRNRGFYVESHCPNLVTHAWSLWKEGRAIEMFDSNIEGSCVLSEVLRCIHVGLLCIQQHAEDRPAMPSVVLMLGSESELAEPKEPGFYVKNDQGAITPFSSRSDTVSTNEITITLLEAR | 836 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g01321 | 836 | Pfam | Protein tyrosine and serine/threonine kinase | 521 | 785 | IPR001245 | GO:0004672|GO:0006468 | |
Cca04g01321 | 836 | Pfam | PAN-like domain | 361 | 425 | IPR003609 | - | |
Cca04g01321 | 836 | PANTHER | CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN | 31 | 829 | - | - | |
Cca04g01321 | 836 | MobiDBLite | consensus disorder prediction | 131 | 153 | - | - | |
Cca04g01321 | 836 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 | 31 | 829 | - | - | |
Cca04g01321 | 836 | SMART | blect_4 | 29 | 166 | IPR001480 | - | |
Cca04g01321 | 836 | Gene3D | Phosphorylase Kinase; domain 1 | 482 | 594 | - | - | |
Cca04g01321 | 836 | MobiDBLite | consensus disorder prediction | 131 | 148 | - | - | |
Cca04g01321 | 836 | SUPERFAMILY | Protein kinase-like (PK-like) | 502 | 790 | IPR011009 | - | |
Cca04g01321 | 836 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 640 | 652 | IPR008271 | GO:0004672|GO:0006468 | |
Cca04g01321 | 836 | ProSiteProfiles | EGF-like domain profile. | 304 | 340 | IPR000742 | - | |
Cca04g01321 | 836 | CDD | PAN_AP_plant | 363 | 440 | - | - | |
Cca04g01321 | 836 | CDD | STKc_IRAK | 525 | 790 | - | - | |
Cca04g01321 | 836 | Pfam | S-locus glycoprotein domain | 225 | 338 | IPR000858 | GO:0048544 | |
Cca04g01321 | 836 | Pfam | Domain of unknown function (DUF3403) | 793 | 836 | IPR021820 | GO:0004674 | |
Cca04g01321 | 836 | Gene3D | - | 18 | 163 | IPR036426 | - | |
Cca04g01321 | 836 | PIRSF | SRK | 1 | 836 | IPR024171 | GO:0004674 | |
Cca04g01321 | 836 | ProSiteProfiles | Bulb-type lectin domain profile. | 23 | 144 | IPR001480 | - | |
Cca04g01321 | 836 | ProSiteProfiles | Protein kinase domain profile. | 519 | 796 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca04g01321 | 836 | ProSiteProfiles | PAN/Apple domain profile. | 357 | 440 | IPR003609 | - | |
Cca04g01321 | 836 | Pfam | D-mannose binding lectin | 71 | 192 | IPR001480 | - | |
Cca04g01321 | 836 | Gene3D | Transferase(Phosphotransferase) domain 1 | 595 | 803 | - | - | |
Cca04g01321 | 836 | CDD | B_lectin | 29 | 166 | IPR001480 | - | |
Cca04g01321 | 836 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 72 | 197 | IPR036426 | - | |
Cca04g01321 | 836 | SMART | serkin_6 | 519 | 790 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca04g01321 | 836 | SMART | ntp_6 | 360 | 439 | IPR003609 | - | |
Cca04g01321 | 836 | Gene3D | Hepatocyte Growth Factor | 358 | 437 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g01321 | Cca-Chr4 | 16759868 | 16825926 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca04g01321 | 454 | 808 | Receptor kinase-like Gene Family | AT4G23230 | 54.494 | 2.98e-127 | 394 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_DLSV | Cca04g01321 | PK_Tyr_Ser-Thr | 1.1e-44 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g01321 | - | - | gmx:100794112 | 1318.52 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca04g01321 | 04 | 16759868 | 16825926 | Cca04g01321 | 04 | 16759868 | 16825926 | ECH |