Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01320 ATGGATATTCTTTCTTTGTTGATCTTTGTTGCATGTATACTCATCCCTTCTCTCAAAGTATCCACAGCCATTGACACCATTCATCTGTCCCAATGCATCAGTGATGGCATGACCTTGGTTTCCCAAGGTGGAAAATTTGAATTTGGTTTCTTCAGTCCTAATCACTCCAACAAACATTACCTTGGAATTTGGTACAAGAACATTATCCCACAGACAGTTGTTTGGGTTGCGGAAAGGGCCATCAATGATTCCTTAGCCATCTTAACTGTCAACAGAACAGGCAACCTTGTCCTCAGACATCACGACAACGTTGTTTGGCACACACCATCTGAGAAACAAGCACAGAATCCAGTGGTGCAGCTTCTGGATTCAGGGAACCTTGTGGTAAGAGAAGAGAGTGAAACAGACCCAGAAGCCTATTTGTGGCAAAGCTTTGATTACCCTTCAGATACAGCACTGCCAGGGATGAAGTTGGGATGGAACCTCAGAACTGGTAGGGAATGGAGAATGACATCTTGGAAGAGTCCTGATGATCCATCCCCAGGAGACTTTTATTGGGGTATGTTGCTCTATAATTATCCTGAGTTTTATCTGATGAAGGGAAAAGAAAAGATTTTGAGAATTGGACCATGGAATGGCCTACATTTCAGTGGTATACCAGATCAAAAGCCTAACCCCGTTTATGCTTACCACTATATATCCAACAAGGATGAAATATACTACACTTATAGCCAGGAGAATGATGGTGTGATCTCAAGATTGGAAATAAATCAAACCTCTTCCACGATTTCTCGATATGTGTGGATGGAGGATAAACAATTTTGGAAGGTCTACAAATCAAGGCCAAGGGACAATTGTGACTATTATGGCATGTGTGGAGCCTATGGGACTTGTGTGATTACAGGCTCACAATTTTGTCAATGCTTAGAAAAGTTCAGTCCCAAGTCACCAAAAGCATGGAACAAAGCTGATTGGAGTCAAGGATGTGTACGAAATAAACCATTAAACTGCACTAACAAGCTTAGGGATGGATTTATGAAAGTGAAAGGTGTAAAACTTCCAGATACTACACATACTTGGGTAGATGAGACAATAGGTCTAGAAGAGTGCAGAGTCAGGTGCTTGAATAATTGTTCTTGTATGGCCTATACTAATTCAGACATAAGAGGTGAAGGTAGTGGTTGTGTCATGTGGTTTGGCGATCTAAATGACATTAGGCAGTTTGACGGTGAGGGGCAGGATCTGTATATTCGAATGGATGCTTCAGAATTAGGGATGCTTTTGGTTGGTTGTTTTCGTATCTACGTTGGCCGGTGCACCATAACAGCGTATTCAGATATTCTACGTAATCAAAATAGGGGAGGTAGTGAGGATGATCAAGATCTCCCATTAGTTGACCTTTCAACAATAGTCACTGCTACTGATAACTTCTCAATAAATAACAAGATAGGAGAAGGTGGTTTTGGACTTGTGTACAAGGGAAGATTAGTAAGTGGACAAGAGATTGCTGTGAAGAGGCTTTCAAGAACCTCTGGACAAGGAATGAGAGAGTTCAAGAATGAAGTAAAGCTGATAGCAAAACTCCAGCACCGAAATCTTGTTAAGCTTCTTGCTTGTTGTGTTCAACAACAAGACATAATGCTGGTTTATGAATACATGACTAACCGTAGCTTGGATCGGTTGATTTTTGATGATACTGAGGCTAAACTACTAGATTGGCCTAAGCGCTTCAACATTATTTGCGGAATTGCTCGAGGTCTTCTTTATCTTCATCAAGATTCTAGATTGAGGATAATTCATAGAGACCTCAAAGCAAGCAATGTTTTGATTGATGACCAACTAAACCCAAAAATATCAGATTTCGGCATTGCTAGAATTTTTGGAGGAGATGAGACCGAAGGAAGTACACAGCGAGTAGTTGGAACTTATGGCTATATGGCACCAGAATATGCAGCTGATGGTATTTTTTCAGTGAAATCTGACGTTTTTAGTTTTGGTATTTTGATGCTGGAGATTATAAGTGGAAAGAGAAGTAGAGGTTTTTATATTGAAAACCACTCTCCTAACCTTGTCACTCATGCATGGAGTCTGTGGAAAAAAGGAAGGGCTATAGAAATGATTGACTCCAACATAGAAGACTCTTGTGCTCTATCAGATGTATTGCGTTGCATCCATGTCAGTCTCTTATGTGTTCAGCAACATGCAGAGGATAGGCCTGCCATGCCTTCTGTGGTTCTAATGTTGGGGAGTGAGAGTGAATTGGCTGAGCCAAAAGAACCTGGTTTCTATCTAAACAATGATGTGGGTGCAACACCTGCTATATCAGGTCGTGTGAGTACATACACAGGAAATTATGCTTTCAATACACAAACAAAAATATAA 2382 0.4068 MDILSLLIFVACILIPSLKVSTAIDTIHLSQCISDGMTLVSQGGKFEFGFFSPNHSNKHYLGIWYKNIIPQTVVWVAERAINDSLAILTVNRTGNLVLRHHDNVVWHTPSEKQAQNPVVQLLDSGNLVVREESETDPEAYLWQSFDYPSDTALPGMKLGWNLRTGREWRMTSWKSPDDPSPGDFYWGMLLYNYPEFYLMKGKEKILRIGPWNGLHFSGIPDQKPNPVYAYHYISNKDEIYYTYSQENDGVISRLEINQTSSTISRYVWMEDKQFWKVYKSRPRDNCDYYGMCGAYGTCVITGSQFCQCLEKFSPKSPKAWNKADWSQGCVRNKPLNCTNKLRDGFMKVKGVKLPDTTHTWVDETIGLEECRVRCLNNCSCMAYTNSDIRGEGSGCVMWFGDLNDIRQFDGEGQDLYIRMDASELGMLLVGCFRIYVGRCTITAYSDILRNQNRGGSEDDQDLPLVDLSTIVTATDNFSINNKIGEGGFGLVYKGRLVSGQEIAVKRLSRTSGQGMREFKNEVKLIAKLQHRNLVKLLACCVQQQDIMLVYEYMTNRSLDRLIFDDTEAKLLDWPKRFNIICGIARGLLYLHQDSRLRIIHRDLKASNVLIDDQLNPKISDFGIARIFGGDETEGSTQRVVGTYGYMAPEYAADGIFSVKSDVFSFGILMLEIISGKRSRGFYIENHSPNLVTHAWSLWKKGRAIEMIDSNIEDSCALSDVLRCIHVSLLCVQQHAEDRPAMPSVVLMLGSESELAEPKEPGFYLNNDVGATPAISGRVSTYTGNYAFNTQTKI 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01320 793 ProSitePatterns Serine/Threonine protein kinases active-site signature. 598 610 IPR008271 GO:0004672|GO:0006468
Cca04g01320 793 ProSiteProfiles Protein kinase domain profile. 477 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01320 793 ProSiteProfiles PAN/Apple domain profile. 337 421 IPR003609 -
Cca04g01320 793 Pfam D-mannose binding lectin 72 174 IPR001480 -
Cca04g01320 793 Gene3D - 19 145 IPR036426 -
Cca04g01320 793 Gene3D Transferase(Phosphotransferase) domain 1 553 759 - -
Cca04g01320 793 SMART ntp_6 340 419 IPR003609 -
Cca04g01320 793 CDD B_lectin 33 148 IPR001480 -
Cca04g01320 793 SMART serkin_6 477 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01320 793 SMART blect_4 30 148 IPR001480 -
Cca04g01320 793 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 767 - -
Cca04g01320 793 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 32 767 - -
Cca04g01320 793 SUPERFAMILY Protein kinase-like (PK-like) 462 748 IPR011009 -
Cca04g01320 793 Pfam S-locus glycoprotein domain 207 316 IPR000858 GO:0048544
Cca04g01320 793 ProSiteProfiles Bulb-type lectin domain profile. 24 142 IPR001480 -
Cca04g01320 793 PIRSF SRK 424 783 IPR024171 GO:0004674
Cca04g01320 793 PIRSF SRK 1 427 IPR024171 GO:0004674
Cca04g01320 793 Gene3D Phosphorylase Kinase; domain 1 443 552 - -
Cca04g01320 793 Pfam Protein tyrosine and serine/threonine kinase 478 745 IPR001245 GO:0004672|GO:0006468
Cca04g01320 793 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 179 IPR036426 -
Cca04g01320 793 CDD STKc_IRAK 483 748 - -
Cca04g01320 793 CDD PAN_AP_plant 334 418 - -
Cca04g01320 793 ProSitePatterns Protein kinases ATP-binding region signature. 483 505 IPR017441 GO:0005524
Cca04g01320 793 Pfam PAN-like domain 337 405 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01320 Cca-Chr4 16725268 16728910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01320 467 765 Receptor kinase-like Gene Family AT4G11530 57.475 3.39e-119 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01320 PK_Tyr_Ser-Thr 9.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01320 - - gmx:100775648 1323.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01320 04 16725268 16728910 Cca04g01320 04 16725268 16728910 ECH