Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01316 ATGTCAGATGATCAATTTCAAGCGAGTGGAAACTGGTGGGAATCAGCAAGAAACGTGAAGTTCGAAAGTGGGGAATCACAGTCTTCATCTTCTGGACTCACCAACATGGGAAACTATGGTTGGCAAAACCATGACATGGCAAGGTCTTCCTCTGTGGATAACTCTGCCTCAGGTGGTTCCACTGTGGTTTTCCATGACCAGAAGCAGCTTCAGCTTCAGcatcagcatcatcagcatcatcatcatcatcatcatGACTCAGCCACCTCCACCAATGACCCCAACTTGCACATGATGGGCTTGGGCCTCTCATCCCAAGCCATGGACTGGAATCAAGCATCTTTGCAGCTGAGAGGTGAGAAGGGTTCAGATAACAGTTTCAGGTCGATGTTGCAAGAGAATTTGAGCTCACCAGGGAGCAGTTTTCAGCAAGAGAGTGGGAACAACAACAATATTGGGTTGTCTCATCACCATCATCAACAAGTTCATTGGAGGCCAGAAAAGTTGTTCTCTGCTGAGTCATCAAGCAATGATCAATTCAAGAGGGGTTTCTCTTTGGACCAAACACAGTTCAGTAGTCCTCAATACAGCTCTGGGGACAGCACTGTCACAAGCCAAGGTTTGCCTTGTTCTTTTCAGATGGACTATGTTGGCAACCCTTCTTCAATATTGCAAGGGCTTTTGGGACAAGAGAGcaacaacagcagcaacaacaacaacaaccaaccccaccaaGGTGCTGGTGCCATGAATTTTCCTTACTCAGCTACTACCTATGGATTAAACTCCAATATTGAGTTGGTTCCTTCTTGGTCCAAAGTTCCTCAGTTTCTGAGAGCTTCACCACCAAAACAACAACCCAATAACCAGCTGCATTTCACCAACAACGCTCCCTTTTGGAACGCTAATTCTGATCCTGCTATCAAGGATGCAAGATCCAGCTTCATCCCCTCGTTGCAACCACCCTTCTCCACATCAAACTTCGACGTACAATCAAAGAATATATGTGATGTTAGAGACTCAGGTGGTGTGGTGAAGAAAAGTGGGGGTGAGCCAGCACCCAAAAGGCCGAGGAACGAAACCCCATCTCCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCGTCAGTGCTCTCTGAAGCCATTGAATATATCAAATTTCTCCATGAGCAAGTCACCGTGTTAAGTACCCCATATATGAAAAGTGGTGCTCCCATACAACATCAGCAGAGTTCTGGTAAATCAAAGGAATCAGAGGGTCCAAAGCAAGATCTTAGAAGCCGAGGGCTATGCTTGGTGCCAGTTTCTAGTACATTCCCAGTGACTAATGAACAACCATTTGAATTTTGGAATCCAACATATGGAGGAACATACAGATAG 1440 0.4333 MSDDQFQASGNWWESARNVKFESGESQSSSSGLTNMGNYGWQNHDMARSSSVDNSASGGSTVVFHDQKQLQLQHQHHQHHHHHHHDSATSTNDPNLHMMGLGLSSQAMDWNQASLQLRGEKGSDNSFRSMLQENLSSPGSSFQQESGNNNNIGLSHHHHQQVHWRPEKLFSAESSSNDQFKRGFSLDQTQFSSPQYSSGDSTVTSQGLPCSFQMDYVGNPSSILQGLLGQESNNSSNNNNNQPHQGAGAMNFPYSATTYGLNSNIELVPSWSKVPQFLRASPPKQQPNNQLHFTNNAPFWNANSDPAIKDARSSFIPSLQPPFSTSNFDVQSKNICDVRDSGGVVKKSGGEPAPKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQHQQSSGKSKESEGPKQDLRSRGLCLVPVSSTFPVTNEQPFEFWNPTYGGTYR 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01316 479 MobiDBLite consensus disorder prediction 22 96 - -
Cca04g01316 479 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 359 408 IPR011598 GO:0046983
Cca04g01316 479 MobiDBLite consensus disorder prediction 130 157 - -
Cca04g01316 479 MobiDBLite consensus disorder prediction 22 69 - -
Cca04g01316 479 MobiDBLite consensus disorder prediction 423 447 - -
Cca04g01316 479 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 8 468 - -
Cca04g01316 479 SMART finulus 370 414 IPR011598 GO:0046983
Cca04g01316 479 MobiDBLite consensus disorder prediction 226 249 - -
Cca04g01316 479 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 468 - -
Cca04g01316 479 Gene3D - 369 431 IPR036638 GO:0046983
Cca04g01316 479 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 369 426 IPR036638 GO:0046983
Cca04g01316 479 CDD bHLH_AtbHLH_like 365 416 IPR045239 -
Cca04g01316 479 MobiDBLite consensus disorder prediction 130 164 - -
Cca04g01316 479 MobiDBLite consensus disorder prediction 340 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01316 Cca-Chr4 16677804 16681684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01316 118 479 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 44.110 5.13e-73 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01316 - - gmx:100818424 747.658