Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01314 ATGGACCTTCTTTCTTTCATGGTTTTATTTGCATGCATACTTGTTTCCTCTCTCAAAATATCTGTAGCAAATGATTCTATTAAGGTGTCCCAATCTATGCATGATGGGAAAACCTTGGTGTCAAAAGGTGGAAAGTTCGAACTTGGCTTTTTCAGCCCAGGCAGCTCCCAAAAACGTTACTTGGGAATTTGGTACAAGAATATCCGAATTCAGACAGTTGTTTGGGTTGCAAATAGGGAAAACCCTATCAATGATTCCTCAGGCATCTTAACAGTGAACTCCACAGGCAATCTCGTTCTCACCCAAAATGAGTCTCTTGTTTGGTACACCAACTCTCACAAACAAGCACAAAATCCAGTGGTAGAGCTCTTGGACAGTGGCAATCTTGTGATAAGAAATGAAGGAGACACAGACACAGAAGGTTACTTGTGGCAAAGCTTTGACTATCCTTCTGATACACTCTTGCCGGAGATGAAGCTGGGAAGTGACCTCAGAACCGGTTTGGAACGGAAATATATTGCATGGAAGAGTCCAGATGATCCATCACCAGGAGATATTTTTAGGGTTTTGAAACTCTACAACTATCCTGAGATTTACATGATGAAGGGAACACAAAAGTTGTTCCGGTATGGACCTTGGAATGGACTATGCTTTAGTGGAATAGCAGATCTACGGAATAATAGCATTTATGGCTTCAATTTTGTGAGAAATAAGGATGAAGTTTACTACACCTTTAGCCTCGTAAGTGATCATGTCATCACCAGAACTGTAACAAACCAATCAGGTTCAATTTCTCGTTATGTTTGGGCGGTGGGTGAAGATCAAGATTGGAAAGTCTATAGATCCTACCCTAAAGAGTTTTGTGACACTTATAGCCTCTGTGGACCCTACGGTTACTGCGTAAGTACTCAATCACAATCCTGCCAATGTTTAAAAGGTTTCAGTCCAAAGTCACCAGAAAGATGGAACTCTTCTGATTGGAGTCAAGGATGTGTGCGCAATAAACCATTAAGGTGCAAAGACAAACTCACGGAGGGGTTTGTGAAATTTAAAGGCCTCAAAGTTCCAGATACTACAAGTACTTGGCTGGATGAGAGTATTGGTCTAGAGGAATGTAGAGTCAAGTGCTTGAATAATTGTTCTTGCATGGCCTTTACTAATTCAGATATTAGAGGTGGAGGTAGTGGTTGTGCCATGTGGTTTGGAGAACTCGTTGACATGAAAATGTATGTAATTGGTGGCCAAGATCTCTATATCAGGATGGATGCTTCTGAGTTAGAACCTGTACATAGGCACAAGAAGAAGATGGGAACAATAGTTGCTGCCACTGTAGCAGCAATTTGTGGGGTTCTTATTCTTCTAAGTACTTATTTTGTTTGCGGAATTCGGAGAAACAATGCTGGAAACTCATTGTCGGAAGTTTACAATGAAAAACATATGGATGATCTAGACATCCAATTGTTTGATCTACTAACAATTGCAACAGCCACTAATGACTTCTCCACGAAAAATAAGATCGGAGAAGGTGGTTTCGGGCCTGTATACAAGGGAATATTAACAAATGGACAAGAAATTGCTGTAAAGACACTATCAAGGAGCTCGTGGCAAGGAGTAACAGAGTTCATAAATGAAGTAAAATTGATTGCAAAACTTCAACATCGGAGCCTTGTAAAACTTCTTGGTTGTTGCATTCAAGAACAAGAAAAAATGCTAATTTATGAGTACATGGCAAACGGTAGCCTAGACTCCTTCATTTTTGATGATAGAAAAAGTAAATTGCTACAATGGCCTGAACGCTTCCATATAATTTGTGGAATTGCAAGAGGACTTATGTATCTTCATCAAGATTCCCGATTAAGAATTATTCATAGAGATCTCAAAGCAAGTAACATCCTTCTTGATGAAAATTTATGTCCAAAAATATCAGATTTTGGAATTGCCAGAACTTTTGGAGGAGACCAATTTGAAGGAAGCACAAGTAGAGTAGTTGGGACTAGTGGGTATATGGCACCAGAGTATGCGGTTGATGGGTTATTTTCGGTGAAATCTGATGTTTTTAGTTTTGGCATTTTAGTGTTGGAGATAGTATGTGGAAAGAGAAACAAAGGACTTTATCACACTGACATGAATCATAACCTCGTTGGTCATGCATGGACATTATGGAAATCAGGCAAGATGTTAGATTTGATTGACTTGAACATGAAAGAGTCATTATGCGTTGTACAAGAAGTACTACGTTGCCTCCATGTTAGTCTTTTGTGTGTGCAGCAATACCCAGAAGATAGGCCAACAATGATGTCCGTGATTCTAATGTTGGAGAGTAACATGGAATTGGTTGATCCTAAAGAACATGGTTTCATTTCAAGAAATACTTTAGGTGAAATTGATTTACGATCAAATAGAAAAGACACGTGTTCAAGTACTGATGTGACAATGACCTTGTTAGAAGCACGATAA 2457 0.3928 MDLLSFMVLFACILVSSLKISVANDSIKVSQSMHDGKTLVSKGGKFELGFFSPGSSQKRYLGIWYKNIRIQTVVWVANRENPINDSSGILTVNSTGNLVLTQNESLVWYTNSHKQAQNPVVELLDSGNLVIRNEGDTDTEGYLWQSFDYPSDTLLPEMKLGSDLRTGLERKYIAWKSPDDPSPGDIFRVLKLYNYPEIYMMKGTQKLFRYGPWNGLCFSGIADLRNNSIYGFNFVRNKDEVYYTFSLVSDHVITRTVTNQSGSISRYVWAVGEDQDWKVYRSYPKEFCDTYSLCGPYGYCVSTQSQSCQCLKGFSPKSPERWNSSDWSQGCVRNKPLRCKDKLTEGFVKFKGLKVPDTTSTWLDESIGLEECRVKCLNNCSCMAFTNSDIRGGGSGCAMWFGELVDMKMYVIGGQDLYIRMDASELEPVHRHKKKMGTIVAATVAAICGVLILLSTYFVCGIRRNNAGNSLSEVYNEKHMDDLDIQLFDLLTIATATNDFSTKNKIGEGGFGPVYKGILTNGQEIAVKTLSRSSWQGVTEFINEVKLIAKLQHRSLVKLLGCCIQEQEKMLIYEYMANGSLDSFIFDDRKSKLLQWPERFHIICGIARGLMYLHQDSRLRIIHRDLKASNILLDENLCPKISDFGIARTFGGDQFEGSTSRVVGTSGYMAPEYAVDGLFSVKSDVFSFGILVLEIVCGKRNKGLYHTDMNHNLVGHAWTLWKSGKMLDLIDLNMKESLCVVQEVLRCLHVSLLCVQQYPEDRPTMMSVILMLESNMELVDPKEHGFISRNTLGEIDLRSNRKDTCSSTDVTMTLLEAR 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01314 818 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Cca04g01314 818 ProSiteProfiles Bulb-type lectin domain profile. 24 144 IPR001480 -
Cca04g01314 818 Gene3D Phosphorylase Kinase; domain 1 474 575 - -
Cca04g01314 818 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 815 - -
Cca04g01314 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Cca04g01314 818 Pfam S-locus glycoprotein domain 208 318 IPR000858 GO:0048544
Cca04g01314 818 CDD PAN_AP_plant 336 420 - -
Cca04g01314 818 Pfam Protein tyrosine and serine/threonine kinase 502 769 IPR001245 GO:0004672|GO:0006468
Cca04g01314 818 Gene3D Transferase(Phosphotransferase) domain 1 576 786 - -
Cca04g01314 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Cca04g01314 818 SMART serkin_6 500 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01314 818 SMART blect_4 30 150 IPR001480 -
Cca04g01314 818 PANTHER - 23 815 - -
Cca04g01314 818 Gene3D - 19 147 IPR036426 -
Cca04g01314 818 SMART ntp_6 342 421 IPR003609 -
Cca04g01314 818 PIRSF SRK 1 818 IPR024171 GO:0004674
Cca04g01314 818 SUPERFAMILY Protein kinase-like (PK-like) 484 773 IPR011009 -
Cca04g01314 818 ProSiteProfiles Protein kinase domain profile. 500 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01314 818 Pfam PAN-like domain 341 407 IPR003609 -
Cca04g01314 818 Pfam D-mannose binding lectin 72 176 IPR001480 -
Cca04g01314 818 CDD STKc_IRAK 506 773 - -
Cca04g01314 818 CDD B_lectin 35 150 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01314 Cca-Chr4 16577097 16587766 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01314 439 786 Receptor kinase-like Gene Family AT4G23230 53.009 2.94e-118 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01314 PK_Tyr_Ser-Thr 4.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01314 - - gmx:100802962 1335.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01314 04 16577097 16587766 Cca04g01314 04 16577097 16587766 ECH