Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g01314 | ATGGACCTTCTTTCTTTCATGGTTTTATTTGCATGCATACTTGTTTCCTCTCTCAAAATATCTGTAGCAAATGATTCTATTAAGGTGTCCCAATCTATGCATGATGGGAAAACCTTGGTGTCAAAAGGTGGAAAGTTCGAACTTGGCTTTTTCAGCCCAGGCAGCTCCCAAAAACGTTACTTGGGAATTTGGTACAAGAATATCCGAATTCAGACAGTTGTTTGGGTTGCAAATAGGGAAAACCCTATCAATGATTCCTCAGGCATCTTAACAGTGAACTCCACAGGCAATCTCGTTCTCACCCAAAATGAGTCTCTTGTTTGGTACACCAACTCTCACAAACAAGCACAAAATCCAGTGGTAGAGCTCTTGGACAGTGGCAATCTTGTGATAAGAAATGAAGGAGACACAGACACAGAAGGTTACTTGTGGCAAAGCTTTGACTATCCTTCTGATACACTCTTGCCGGAGATGAAGCTGGGAAGTGACCTCAGAACCGGTTTGGAACGGAAATATATTGCATGGAAGAGTCCAGATGATCCATCACCAGGAGATATTTTTAGGGTTTTGAAACTCTACAACTATCCTGAGATTTACATGATGAAGGGAACACAAAAGTTGTTCCGGTATGGACCTTGGAATGGACTATGCTTTAGTGGAATAGCAGATCTACGGAATAATAGCATTTATGGCTTCAATTTTGTGAGAAATAAGGATGAAGTTTACTACACCTTTAGCCTCGTAAGTGATCATGTCATCACCAGAACTGTAACAAACCAATCAGGTTCAATTTCTCGTTATGTTTGGGCGGTGGGTGAAGATCAAGATTGGAAAGTCTATAGATCCTACCCTAAAGAGTTTTGTGACACTTATAGCCTCTGTGGACCCTACGGTTACTGCGTAAGTACTCAATCACAATCCTGCCAATGTTTAAAAGGTTTCAGTCCAAAGTCACCAGAAAGATGGAACTCTTCTGATTGGAGTCAAGGATGTGTGCGCAATAAACCATTAAGGTGCAAAGACAAACTCACGGAGGGGTTTGTGAAATTTAAAGGCCTCAAAGTTCCAGATACTACAAGTACTTGGCTGGATGAGAGTATTGGTCTAGAGGAATGTAGAGTCAAGTGCTTGAATAATTGTTCTTGCATGGCCTTTACTAATTCAGATATTAGAGGTGGAGGTAGTGGTTGTGCCATGTGGTTTGGAGAACTCGTTGACATGAAAATGTATGTAATTGGTGGCCAAGATCTCTATATCAGGATGGATGCTTCTGAGTTAGAACCTGTACATAGGCACAAGAAGAAGATGGGAACAATAGTTGCTGCCACTGTAGCAGCAATTTGTGGGGTTCTTATTCTTCTAAGTACTTATTTTGTTTGCGGAATTCGGAGAAACAATGCTGGAAACTCATTGTCGGAAGTTTACAATGAAAAACATATGGATGATCTAGACATCCAATTGTTTGATCTACTAACAATTGCAACAGCCACTAATGACTTCTCCACGAAAAATAAGATCGGAGAAGGTGGTTTCGGGCCTGTATACAAGGGAATATTAACAAATGGACAAGAAATTGCTGTAAAGACACTATCAAGGAGCTCGTGGCAAGGAGTAACAGAGTTCATAAATGAAGTAAAATTGATTGCAAAACTTCAACATCGGAGCCTTGTAAAACTTCTTGGTTGTTGCATTCAAGAACAAGAAAAAATGCTAATTTATGAGTACATGGCAAACGGTAGCCTAGACTCCTTCATTTTTGATGATAGAAAAAGTAAATTGCTACAATGGCCTGAACGCTTCCATATAATTTGTGGAATTGCAAGAGGACTTATGTATCTTCATCAAGATTCCCGATTAAGAATTATTCATAGAGATCTCAAAGCAAGTAACATCCTTCTTGATGAAAATTTATGTCCAAAAATATCAGATTTTGGAATTGCCAGAACTTTTGGAGGAGACCAATTTGAAGGAAGCACAAGTAGAGTAGTTGGGACTAGTGGGTATATGGCACCAGAGTATGCGGTTGATGGGTTATTTTCGGTGAAATCTGATGTTTTTAGTTTTGGCATTTTAGTGTTGGAGATAGTATGTGGAAAGAGAAACAAAGGACTTTATCACACTGACATGAATCATAACCTCGTTGGTCATGCATGGACATTATGGAAATCAGGCAAGATGTTAGATTTGATTGACTTGAACATGAAAGAGTCATTATGCGTTGTACAAGAAGTACTACGTTGCCTCCATGTTAGTCTTTTGTGTGTGCAGCAATACCCAGAAGATAGGCCAACAATGATGTCCGTGATTCTAATGTTGGAGAGTAACATGGAATTGGTTGATCCTAAAGAACATGGTTTCATTTCAAGAAATACTTTAGGTGAAATTGATTTACGATCAAATAGAAAAGACACGTGTTCAAGTACTGATGTGACAATGACCTTGTTAGAAGCACGATAA | 2457 | 0.3928 | MDLLSFMVLFACILVSSLKISVANDSIKVSQSMHDGKTLVSKGGKFELGFFSPGSSQKRYLGIWYKNIRIQTVVWVANRENPINDSSGILTVNSTGNLVLTQNESLVWYTNSHKQAQNPVVELLDSGNLVIRNEGDTDTEGYLWQSFDYPSDTLLPEMKLGSDLRTGLERKYIAWKSPDDPSPGDIFRVLKLYNYPEIYMMKGTQKLFRYGPWNGLCFSGIADLRNNSIYGFNFVRNKDEVYYTFSLVSDHVITRTVTNQSGSISRYVWAVGEDQDWKVYRSYPKEFCDTYSLCGPYGYCVSTQSQSCQCLKGFSPKSPERWNSSDWSQGCVRNKPLRCKDKLTEGFVKFKGLKVPDTTSTWLDESIGLEECRVKCLNNCSCMAFTNSDIRGGGSGCAMWFGELVDMKMYVIGGQDLYIRMDASELEPVHRHKKKMGTIVAATVAAICGVLILLSTYFVCGIRRNNAGNSLSEVYNEKHMDDLDIQLFDLLTIATATNDFSTKNKIGEGGFGPVYKGILTNGQEIAVKTLSRSSWQGVTEFINEVKLIAKLQHRSLVKLLGCCIQEQEKMLIYEYMANGSLDSFIFDDRKSKLLQWPERFHIICGIARGLMYLHQDSRLRIIHRDLKASNILLDENLCPKISDFGIARTFGGDQFEGSTSRVVGTSGYMAPEYAVDGLFSVKSDVFSFGILVLEIVCGKRNKGLYHTDMNHNLVGHAWTLWKSGKMLDLIDLNMKESLCVVQEVLRCLHVSLLCVQQYPEDRPTMMSVILMLESNMELVDPKEHGFISRNTLGEIDLRSNRKDTCSSTDVTMTLLEAR | 818 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g01314 | 818 | ProSiteProfiles | PAN/Apple domain profile. | 339 | 422 | IPR003609 | - | |
Cca04g01314 | 818 | ProSiteProfiles | Bulb-type lectin domain profile. | 24 | 144 | IPR001480 | - | |
Cca04g01314 | 818 | Gene3D | Phosphorylase Kinase; domain 1 | 474 | 575 | - | - | |
Cca04g01314 | 818 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 | 23 | 815 | - | - | |
Cca04g01314 | 818 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 73 | 181 | IPR036426 | - | |
Cca04g01314 | 818 | Pfam | S-locus glycoprotein domain | 208 | 318 | IPR000858 | GO:0048544 | |
Cca04g01314 | 818 | CDD | PAN_AP_plant | 336 | 420 | - | - | |
Cca04g01314 | 818 | Pfam | Protein tyrosine and serine/threonine kinase | 502 | 769 | IPR001245 | GO:0004672|GO:0006468 | |
Cca04g01314 | 818 | Gene3D | Transferase(Phosphotransferase) domain 1 | 576 | 786 | - | - | |
Cca04g01314 | 818 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 621 | 633 | IPR008271 | GO:0004672|GO:0006468 | |
Cca04g01314 | 818 | SMART | serkin_6 | 500 | 779 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca04g01314 | 818 | SMART | blect_4 | 30 | 150 | IPR001480 | - | |
Cca04g01314 | 818 | PANTHER | - | 23 | 815 | - | - | |
Cca04g01314 | 818 | Gene3D | - | 19 | 147 | IPR036426 | - | |
Cca04g01314 | 818 | SMART | ntp_6 | 342 | 421 | IPR003609 | - | |
Cca04g01314 | 818 | PIRSF | SRK | 1 | 818 | IPR024171 | GO:0004674 | |
Cca04g01314 | 818 | SUPERFAMILY | Protein kinase-like (PK-like) | 484 | 773 | IPR011009 | - | |
Cca04g01314 | 818 | ProSiteProfiles | Protein kinase domain profile. | 500 | 787 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca04g01314 | 818 | Pfam | PAN-like domain | 341 | 407 | IPR003609 | - | |
Cca04g01314 | 818 | Pfam | D-mannose binding lectin | 72 | 176 | IPR001480 | - | |
Cca04g01314 | 818 | CDD | STKc_IRAK | 506 | 773 | - | - | |
Cca04g01314 | 818 | CDD | B_lectin | 35 | 150 | IPR001480 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g01314 | Cca-Chr4 | 16577097 | 16587766 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca04g01314 | 439 | 786 | Receptor kinase-like Gene Family | AT4G23230 | 53.009 | 2.94e-118 | 369 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_DLSV | Cca04g01314 | PK_Tyr_Ser-Thr | 4.7e-50 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g01314 | - | - | gmx:100802962 | 1335.09 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca04g01314 | 04 | 16577097 | 16587766 | Cca04g01314 | 04 | 16577097 | 16587766 | ECH |