Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01313 ATGAATCCCGAATCCACTCTTAAGATAAGAGTGGTTGCCATCCGCTCTCATTTGTGTTTCACGGATAAAAATACAAAAAATCAATTCAAAGCACAACTTTTCAATCTACACCAAAACCAAACTGAAATCCACGCCAGCGGCTCCGGCAAGTCCACGCTCATCGACGCACTCGCGGGGCGCATCTCCAAAGACAGCCAGAAAGGGTCCCTCACGCTGAACGGCGACGCTCTCGAGTCCAGCCTCCTCAAAGTCATCTCCATGCTCACCGTCGAAGAAACCCTCACCTTCGCCGCTGAGTTCCACCTCTCCCGCTCCCTCTCCATGTCCAAGAAAAAAGCCCGCGTCCACGCCCTCATCGACCAGCTTGGCCTCCGCTTCGCTGCCTCCACCGTCATCGGTGACGAAGGCCACCGCGACGTCTCCGGCGGCGAACGGCGCCGCGTCTCCATCGGCATCCAGCACCTCTACTCCACCAAGCTCCACCAGGCCCTCCGCAGAGTCAACATCTCAGGCGACGCGCCCCGCCGAGGAAAGGTCGTCCGTGAGGCCGCCGACAGGGTGCTCGCCGTCGCCGCCCGGGGGAGGACTCGCTGGAGCCGCGCCATCTTGACCCACCGCCTCAAGCTCAAGTTCAGGAAACAGAGCCACAAGAGGCACAAAGTGGTTGGGCCAGCCCACCCCAAGAAGCCCCGCTTCGGCATCCTCCGCCTCAAGGCCAAAACCCTCCCCGCCGTCCAACGAAAAGTCAGGTTCTTGAGTCGCTTGGTCCCCGGTTGCCGGAAAGAACCGCTTCCCGTGATTCTCGAAGAAGCAATCGATTACATACTCGCGCTCGAGATGCAGGTTCGAGTCATGGCAGCTCTTGCTAACTTACTCTTAGGCTCTTCCTCCTCCGCCGCCGCCACTACCGCTGCATCCAGAGAATCGCTCAGAGCGGAAGCATCTTAA 948 0.5907 MNPESTLKIRVVAIRSHLCFTDKNTKNQFKAQLFNLHQNQTEIHASGSGKSTLIDALAGRISKDSQKGSLTLNGDALESSLLKVISMLTVEETLTFAAEFHLSRSLSMSKKKARVHALIDQLGLRFAASTVIGDEGHRDVSGGERRRVSIGIQHLYSTKLHQALRRVNISGDAPRRGKVVREAADRVLAVAARGRTRWSRAILTHRLKLKFRKQSHKRHKVVGPAHPKKPRFGILRLKAKTLPAVQRKVRFLSRLVPGCRKEPLPVILEEAIDYILALEMQVRVMAALANLLLGSSSSAAATTAASRESLRAEAS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01313 315 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 152 307 - -
Cca04g01313 315 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 159 IPR027417 -
Cca04g01313 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 249 293 IPR036638 GO:0046983
Cca04g01313 315 CDD bHLH_AtIBH1_like 234 289 IPR044549 GO:0006355
Cca04g01313 315 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 152 307 IPR044660 GO:0006355
Cca04g01313 315 Gene3D - 43 161 IPR027417 -
Cca04g01313 315 Pfam ABC transporter 46 151 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01313 Cca-Chr4 16549819 16552980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01313 153 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 56.209 1.16e-44 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01313 - - ccaj:109791193 361.303