Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01312 ATGGACTTTCTTCCTTTCATGATTTTGTTTGCATGCATACTTGCTCCCTCTCTCAAAATTTCCATAGCAAATGATTCTATCAACGTGATCCAGTCCATGAGTGATGGGAAGACCTTGGTGTCAAAAGGTGGAAAGTTCGAACTTGGTTTTTTCAGCCCAGGTAGTTCCCAGCAACGTTACCTTGGCATTTGGTACAAGAATGTCTCAACTCAGACAGTTGTTTGGGTTGCAAATAGGGCAAACCCTATCAATGGTTCCTCAGGCATCTTAACAGTGAACTCCTCAGGTAATCTTATTCTCACTCAAAATGGGTCTCTTGTTTGGTACACCAACTCTCACAAACAAGCACAGAATCCAGTGGTAGAGCTCTTGGACAGTGGCAATCTTGTGATAAGAAATGAGGCCGAAACAAACCCAGAAGGGTACTTGTGGCAAAGCTTTGATTATCCATCTGATACACTCTTGCCAGGGATGAAATTGGGATGGGACCTCAAAACCGGTTTGGAAAGGAGATATACTGCATGGAAGAGTCCGGATGATCCATCAGAAGGAGATGTTTATAGGGTTTTAAAACTCTATAATTATCCTGAGATTTATACGATGAAGGGCGCAAAAAAATTGTTCCGGTTTGGTCCTTGGAATGGAGTATATTTTAGTGGAATACCAGATCTACATAATAACACCATTTTTGGCATTAATTTTGTCAGCAACAAGGATATGGTCTACTACACCTTTAGTGTCTTAAATGATATTTTAATCACTAGAACTGTGATAAACCAAACAGGTTCACTTTATCGCTATGTATGGGTGGAAGATGATGGAGATTGGAGGACTTATAGATCCTTCCCGATGGAGTTTTGTGACACGTATGGCCTCTGTGGACCCTACGGGAACTGCGTCAGTACTCAATCCCAAGCCTGCCAATGTTTGAAAGGTTTCAGACCAAAGTCACCAGAAGCATGGATTTCATCTGGGTGGAGTCAAGGATGTGTACGCAATAAACCATTAAGCTGCAAAGACAAACTCACAGAGGGGTTTGTCAAATTTAAAGGCCTCAAAGTTCCAGACACTACACGTACTTGGTTGGATGAGAGTATTGGTCTAGAGGAATGTAGAGTCAAGTGCTTGAATAATTGTTCTTGCATGGCCTTTACTAATTTAGATATTAGAGGTGGAGGTAGTGGTTGTGTCATGTGGTTTGGAGATCTCATTGACATCAAACAGTTTGAAACTGGTGGCCAAGATCTATATATCAGGATGGATGCTTCAGAGTTAGAACCTGTACATTGGCACAAGAAGAACACGCCAACAATAGTTGCATCCACCATTGCTGCAATTTGTGGAGTTCTTATTCTGAGTACTTATTTTATTTGCAGAATCCAGAGGAACAATGATGGAAATGCATTGATAGGAGATAACAATGATGTTGATGATCTTGACATCCAATTATTTGATCTAACAACAATTACAATAGCCACTAATAACTTCTCCAAGGAAAATAAGATTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGAGTATTAATGGATGGGCAAGAAATAGCTGTAAAGACTCTATCAAAAAGCTCATGGCAGGGAGCAACAGAGTTCATTAATGAAGTAAAATTGATTGCAAAACTCCAGCATCGGAATCTTGTAAAACTTCTTGGATGCTCCATTCAAGGACAAGAGAAAATGTTAATTTATGAGTACATGGCAAATGGCAGTCTAGACTTCTTTATATTTGATGATACAAAAAGTAAATTGTTAGGGTGGCCTCAACGCTTAGATATAATTTGtggaattgcaagaggacttatgtaccttcatcaagattctcgattgaggattatccatagagatctcaaagcaagcaatgttttgcttgatgaaaatttgagccccaaaatatcagattttggattagcaagaatttttggaggagaTCAAATTGAAGGAAACACAAGGAGAATAGTTGGGACATATGGGTATATGGCGCCAGAGTATGCTTTTGATGGGTTATTTTCTGTGAAATCTGATGTCTTTAGTTTTGGCATTTTAGTATTGGAGATTGTGTGTGGCAAGAAAAATAAAGGACTTTATCACACAGATAAGAATCTGAACCTTGTTGGTCATGTATGGACAACCTGGAAAGAGGGCAAAGCATTAGATTTGATTGACTCAAACATGAAGGAGTCATGCATTATGTCAGAAGTACTTCGTTGTCTCCATATTGGACTTTTGTGTGTGCAACAATACCCAAAAGATAGGCCTACAATGGCATCCATTATTTTGATGTTGGAGAGTCGCATGGAATTGATGGAGCCTAAAGAATGTGGTTTCATTCCAAGAAATGATTCGGTTGAAGTAGATTCAAGCTCAAGCCATAAAGACACATGTTCAACCAACGATGTGACAATTACAGTATTAGAAGCTCGATGA 2442 0.3718 MDFLPFMILFACILAPSLKISIANDSINVIQSMSDGKTLVSKGGKFELGFFSPGSSQQRYLGIWYKNVSTQTVVWVANRANPINGSSGILTVNSSGNLILTQNGSLVWYTNSHKQAQNPVVELLDSGNLVIRNEAETNPEGYLWQSFDYPSDTLLPGMKLGWDLKTGLERRYTAWKSPDDPSEGDVYRVLKLYNYPEIYTMKGAKKLFRFGPWNGVYFSGIPDLHNNTIFGINFVSNKDMVYYTFSVLNDILITRTVINQTGSLYRYVWVEDDGDWRTYRSFPMEFCDTYGLCGPYGNCVSTQSQACQCLKGFRPKSPEAWISSGWSQGCVRNKPLSCKDKLTEGFVKFKGLKVPDTTRTWLDESIGLEECRVKCLNNCSCMAFTNLDIRGGGSGCVMWFGDLIDIKQFETGGQDLYIRMDASELEPVHWHKKNTPTIVASTIAAICGVLILSTYFICRIQRNNDGNALIGDNNDVDDLDIQLFDLTTITIATNNFSKENKIGEGGFGPVYKGVLMDGQEIAVKTLSKSSWQGATEFINEVKLIAKLQHRNLVKLLGCSIQGQEKMLIYEYMANGSLDFFIFDDTKSKLLGWPQRLDIICGIARGLMYLHQDSRLRIIHRDLKASNVLLDENLSPKISDFGLARIFGGDQIEGNTRRIVGTYGYMAPEYAFDGLFSVKSDVFSFGILVLEIVCGKKNKGLYHTDKNLNLVGHVWTTWKEGKALDLIDSNMKESCIMSEVLRCLHIGLLCVQQYPKDRPTMASIILMLESRMELMEPKECGFIPRNDSVEVDSSSSHKDTCSTNDVTITVLEAR 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01312 813 ProSiteProfiles Bulb-type lectin domain profile. 24 144 IPR001480 -
Cca04g01312 813 SMART blect_4 30 150 IPR001480 -
Cca04g01312 813 Gene3D Transferase(Phosphotransferase) domain 1 572 779 - -
Cca04g01312 813 ProSiteProfiles PAN/Apple domain profile. 338 421 IPR003609 -
Cca04g01312 813 SUPERFAMILY Protein kinase-like (PK-like) 481 768 IPR011009 -
Cca04g01312 813 CDD B_lectin 31 150 IPR001480 -
Cca04g01312 813 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Cca04g01312 813 Gene3D Phosphorylase Kinase; domain 1 471 571 - -
Cca04g01312 813 CDD STKc_IRAK 502 768 - -
Cca04g01312 813 Pfam Protein tyrosine and serine/threonine kinase 498 765 IPR001245 GO:0004672|GO:0006468
Cca04g01312 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Cca04g01312 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Cca04g01312 813 SMART serkin_6 496 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01312 813 Gene3D - 19 147 IPR036426 -
Cca04g01312 813 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 810 - -
Cca04g01312 813 CDD PAN_AP_plant 335 419 - -
Cca04g01312 813 PIRSF SRK 1 813 IPR024171 GO:0004674
Cca04g01312 813 Pfam PAN-like domain 340 406 IPR003609 -
Cca04g01312 813 ProSiteProfiles Protein kinase domain profile. 496 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01312 813 PANTHER - 23 810 - -
Cca04g01312 813 SMART ntp_6 341 420 IPR003609 -
Cca04g01312 813 Pfam D-mannose binding lectin 72 176 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01312 Cca-Chr4 16537774 16545115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01312 446 781 Receptor kinase-like Gene Family AT4G23230 56.677 6.90e-126 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01312 PK_Tyr_Ser-Thr 3.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01312 - - gmx:100802962 1339.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01312 04 16537774 16545115 Cca04g01312 04 16537774 16545115 ECH