Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01311 ATGTTTGCACAAAAGAATGCAGAGGAAAAATTTAAACGGGGAGACTTAAAAGGAGCCATCATTTGTGCCACCATGGCCAAAACCCTAGACTCCAATATAGATGGCATTGATGAAACTCTTTTTGCCTACAAAATCCACCTCGCTGCTTCGACAAAACATGGCAAAGGTCAAGGTCGATTCAAAGatctcacttatctttggacccaccctaacaACGGTACAACAAATTGGAAGCAAGTTCTTGGCATCAGGGAAGGCTTTGATGACATTGAGAGCATCAAGAATCAATGCGACAAATTGGTAGAGATGGTTAACCCAACAAAGAACGCTTCCGTTGCAACTTTGGGTGCTCTTAGACTCATTCACAAAGCTCGGTGTGACCTATGTAACCCAAATAATCAAAAATTGGTTCTTTCAAATCAACAAATACATGGCATCAAAGTTACCAAAAAGGCATGTCCTCGGTGCAGAAAGTGGTGCAAGTTCTATGTTCCTACGGTTTCAAGTGCACCCAAACATGGAGAAAATTGCCTTAAAACGAAAACTGTTTTAATCACGTGCTCCGCTTGCAGATTCCAGTTCGATCCCACACCTGACATTGACAAGACTCCAAAGTCAAGAAATGAAGCACCAGATGATGTTTACATTATAGTGTCTGGAGAAGTGGAGATAATCAGTAGCGTAATGGAGAAAAAGAGAATTGTAGGGAATTTACGTACTGAGGATATGTTTGGAGAGGTTGGTGCACTTTGTTGTAGACCTCAAAGCTTTACCTATAGAACCAAGACTCTCACACAACTCCTGAGACTGAAGACCAATACTCTTATAGAAGCAATGCAGATTAAAAAAGAAGACAACATACAAATACGCAAAAATTTCCTTCAGCTCAAGGATCTGAGTATCAGAGATTTGATGGTGGAGAATGTGGAAGAAGAGGACCTTAACAAGGTCCTCTTCTTCCACATTCTCCACCATCAAATCTCTGATACTCAGATCCTTGAGCTGCTTGAAATGCTGCATTTGCATCACTTCTATTCTGTTTAA 1044 0.3956 MFAQKNAEEKFKRGDLKGAIICATMAKTLDSNIDGIDETLFAYKIHLAASTKHGKGQGRFKDLTYLWTHPNNGTTNWKQVLGIREGFDDIESIKNQCDKLVEMVNPTKNASVATLGALRLIHKARCDLCNPNNQKLVLSNQQIHGIKVTKKACPRCRKWCKFYVPTVSSAPKHGENCLKTKTVLITCSACRFQFDPTPDIDKTPKSRNEAPDDVYIIVSGEVEIISSVMEKKRIVGNLRTEDMFGEVGALCCRPQSFTYRTKTLTQLLRLKTNTLIEAMQIKKEDNIQIRKNFLQLKDLSIRDLMVENVEEEDLNKVLFFHILHHQISDTQILELLEMLHLHHFYSV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01311 347 PANTHER POTASSIUM CHANNEL AKT1 207 315 IPR045319 GO:0005249|GO:0006813
Cca04g01311 347 CDD CAP_ED 208 280 IPR000595 -
Cca04g01311 347 ProSiteProfiles cAMP/cGMP binding motif profile. 207 279 IPR000595 -
Cca04g01311 347 SMART cnmp_10 164 294 IPR000595 -
Cca04g01311 347 Pfam Cyclic nucleotide-binding domain 207 280 IPR000595 -
Cca04g01311 347 SUPERFAMILY cAMP-binding domain-like 208 295 IPR018490 -
Cca04g01311 347 Gene3D Jelly Rolls 206 317 IPR014710 -
Cca04g01311 347 PANTHER POTASSIUM CHANNEL AKT2/3 207 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01311 Cca-Chr4 16527525 16532170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01311 207 314 Ion Channels AT4G22200 62.832 2.60e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01311 K21867 - gmx:100798422 149.443