Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01309 ATGGATCTTCTGTGCAACGCATATTCCAATACCTCAgacgacgacgacgacgaagaACAGCCAAAACGACAGAGACTATCACTCTCTTCCTCTAACCCGCCAAAACCACGTCTTCACTTTTCTTCCCCTCCGTTATTCGACCACCAAACGCAGCCTCCAATTCCCGGACGATACGTTTCAAAACGACAACGCGCATTGATGGCTCAAACCcctccttctcctcctcctcctcAACCCGTTCCTGTTCCATCTCGGTTCACGCTATCTGGGAGTCTCTCGGATGCTGATGTACCCCATAATATTTTATCATTGTTGAAAAGTAAAGCAAAGGGTCATCAAAGGCCAACCCTGATGTCTGAAAAACTATATGCAACTCTACAGGGGCATACAAAAGCTGTCAGTGCTATACATTGGTCATCAACTCATGCTCATCTCCTTGCATCTGCTGGGATGGATCATACTATTTGCATATGGAATGTGTGGAGCAGAAATCAGAAGAAAGCATGTGTTCTAAACTTCCACAATGCAGCAGTCAAAGATGTGAAATGGTCTCAACAAGGGCACTTTCTACTTTCTTGTGGATATGATTGCACATCAAGGTTGATCGATGTTGAAAAGGGAGTGGAGACTCAGGTTTTCAGAGAAGATCAAATTGTTGGAGTTTTGAAGTTTCATCCAGACAATTCAAATCTCTTCCTTTCTGGAGGGACAAAGGGCAATATCAAACTATGGGATGTCAGAACTGGCAAAGTAGTGCATAATTATAATCGAAATTTAGGTCCAATTCTGGATGTGGAGTTTACATTGACCGGGAAGGAATTCATTTCTTCTAGTGATGTATCACAGAGTAATATCAGTGAGAACGCAATTATTGTTTGGGATGTGTCTAGACAGGTACCATTGTCTAATCAGGTTTATGCGGAAGCTTTTACATGTCCCTGTGTGAGGCGCCACCCTTTTGATTCGACTTTCGTTGCCCAATCAAATGGGAATTATGTTGCAATCTTTACTACCACCCCACCTTACAGACTCAACAAATATAAGCGATATGAGAGTCATGCGGTCTCTGGGTTCCCAATCAAGTGCAATTTCAGTTTGGATGGGAAAAAACTTGCTTCTGGCTCTTCAGATGGTTCTATCTACCTTTATGATTATCAGTCATCCAAAGTTGTGAAGAAAATAAAGGCCCATGACGAAGCTTGCATAGATGTTGCCTTCCACCCGGTTATACCTAATGTTATTGCTTCATGTTCATGGGATGGAAGTATTTTGGTAGTTGAGTAG 1284 0.4081 MDLLCNAYSNTSDDDDDEEQPKRQRLSLSSSNPPKPRLHFSSPPLFDHQTQPPIPGRYVSKRQRALMAQTPPSPPPPQPVPVPSRFTLSGSLSDADVPHNILSLLKSKAKGHQRPTLMSEKLYATLQGHTKAVSAIHWSSTHAHLLASAGMDHTICIWNVWSRNQKKACVLNFHNAAVKDVKWSQQGHFLLSCGYDCTSRLIDVEKGVETQVFREDQIVGVLKFHPDNSNLFLSGGTKGNIKLWDVRTGKVVHNYNRNLGPILDVEFTLTGKEFISSSDVSQSNISENAIIVWDVSRQVPLSNQVYAEAFTCPCVRRHPFDSTFVAQSNGNYVAIFTTTPPYRLNKYKRYESHAVSGFPIKCNFSLDGKKLASGSSDGSIYLYDYQSSKVVKKIKAHDEACIDVAFHPVIPNVIASCSWDGSILVVE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01309 427 ProSitePatterns Trp-Asp (WD) repeats signature. 146 160 IPR019775 -
Cca04g01309 427 ProSiteProfiles Trp-Asp (WD) repeats profile. 212 254 IPR001680 GO:0005515
Cca04g01309 427 ProSiteProfiles Trp-Asp (WD) repeats profile. 364 393 IPR001680 GO:0005515
Cca04g01309 427 SUPERFAMILY WD40 repeat-like 118 424 IPR036322 GO:0005515
Cca04g01309 427 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 126 160 - -
Cca04g01309 427 Pfam WD domain, G-beta repeat 222 245 IPR001680 GO:0005515
Cca04g01309 427 Pfam WD domain, G-beta repeat 170 202 IPR001680 GO:0005515
Cca04g01309 427 Pfam WD domain, G-beta repeat 350 384 IPR001680 GO:0005515
Cca04g01309 427 Pfam WD domain, G-beta repeat 123 159 IPR001680 GO:0005515
Cca04g01309 427 ProSiteProfiles Trp-Asp (WD) repeats profile. 126 168 IPR001680 GO:0005515
Cca04g01309 427 SMART WD40_4 119 159 IPR001680 GO:0005515
Cca04g01309 427 SMART WD40_4 248 294 IPR001680 GO:0005515
Cca04g01309 427 SMART WD40_4 387 427 IPR001680 GO:0005515
Cca04g01309 427 SMART WD40_4 345 384 IPR001680 GO:0005515
Cca04g01309 427 SMART WD40_4 164 203 IPR001680 GO:0005515
Cca04g01309 427 SMART WD40_4 206 245 IPR001680 GO:0005515
Cca04g01309 427 CDD WD40 122 425 - -
Cca04g01309 427 Gene3D - 104 427 IPR015943 GO:0005515
Cca04g01309 427 MobiDBLite consensus disorder prediction 1 58 - -
Cca04g01309 427 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 426 - -
Cca04g01309 427 ProSiteProfiles Trp-Asp (WD) repeats profile. 171 212 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01309 15 383 U-box Gene Family AT1G04510 23.097 7.87e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01309 K24742 - gmx:100790592 753.821