Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01308 ATGGACATTCTTCCTTTCATGATTTTATTTGCATGCATACTTTCTCTTTCTCTCAAAATCTCCGTAGCAAATGATTCTATCAACGTGCTCCAGTCCCTGAGAGATGGGAAGACCTTGGTGTCAAAAGGTGGAAAGTTCGAACTTGGTTTTTTCAATCCAGGTAGTTCCCAGAAACGTTACCTAGGCATATGGTACAAGAATATCCCAGTTCAGACAGTTGTTTGGGTTGCAAATAGGGTAAACCCTATCAATGATTCCTTAGGCATCTTAACAGTGAACTCCACAGGAAATCTTGTTCTCACTCAAAACGGGTCTCTTGTTTGGTGCACAAACTCTCACAAACAAGCACAGAATCCAGTGGTAGAGCTCTTGGACAGTGGCAATCTTGTGATAAGAAATGAGGCAGATACAAACCCAGAAGCGTACTTGTGGCAAAGTTTTGATTATCCATCTGATACAGTTTTGCCAGAGATGAAAATCGGATGGGACCTCCGAACCGGTTTGGAACGAAGACTAACATCTTGGAAGAGTTCAGATGATCCATCACTTGGAAATGGTTATTATGTTATGAATAACTGTAGCTATCCTGATATGTATACATTGGAGAGAACACAAAAGTTATCCCGGTTTGGTCCTTGGAATGGCATGTACTTTAGTGGAATACCAGGTCTACAAAACAACACCATTTTTGGCATTAGTTTTGTCAGCAATAAGGATGAAGTTTACAGCTCCTTTAGCATCTTCAGTAACATAACCATCGCCAGAACTGTAATAAACCAAACAGGTTATATTTATCGCTATGTATGGGTGGAGGATGATGGAGATTGGAGGACATATAGATCCTTCCCTTTGGAGTTTTGTGACACTTATGGCCTCTGTGGACCCTACGGGAACTGCCTAAGTACTCAATCCCAAGCCTGCCAATGTTTGAAAGGTTTCAGACCAAAGTCACCAGAAGCATGGATCTCATCTGGGTGGAGTCAAGGATGTGTACGCAATAAACCATTAAACTGCAAACACAAACTCACAGAAGGGTTTGTGAAATTTAAAGGCCTCAAAGTTCCAGACACTACACATACTTGGTTGGATGAGAGTATTGGTCTAGAGGAATGTAGAGTCAAGTGCTTGAATAATTGTTCTTGCATGGCCTTTACTAATTCAGATATTAGAGGTAGAGGTAATGGTTGTGTCATGTGGTTTGGAGATCTCATTGACTTGAAACAGTTTGAAACTGGTGGCCAAGATCTATATATCAGGATGGATGCTTCTGAGTTAGAACCTGTATCTAGCCACAAGAAGAACACGCCAACAATAGTTGCTTCCACCATTGCTGCAATCTGTGGGGTTCTTATACTAAGTACTTATTTTATTTGCAGATTCCGGAGGAGCAGTGCAGgaaatgaattgacacgagatgacaatgaaaaaaatgTGGATGATCTTGACATCCAATTGTTTGATCTAGCAACAATTATGATTGCCACTAATAATTTCTCCATGGAGAATAAGATTGGGGAAGGTGGTTTTGGATCTGTATACAAGGGAGTATTAATGGATGGACAAGAAATTGCTGTAAAGACTCTATCAAGAAGCTCATGGCAAGGGGAAATAGAGTTCATTAATGAAGTAAAATTGATTGCAAAACTTCAACATCGAAATCTTGTAAAACTTCTTGGTTGCTTCATTCAAGGACAAGAAAAAATGCTAATTTATGAGTACATGGCAAGTGGTAGCCTAGACTCCTTTATTTTTGATGATACAAAAAGTAAATTGTTAGGGTGGCCTCAACGCTTACATATAATTTGTGGAATTGCAAGGGGACTTATGTATCTTCATCAAGATTCTCGATTGAGGGTTATCCATAGAGATCTCAAAGCCAGTAATGTTTTGCTTGATGAAAATTTGAGTCCAAAAATATCAGATTTTGGATTGGCTAGAGTATTCAAAGGAGATCAAATTGAAGGAAACACAAGTAGAGTAGTTGGGACCTATGGGTATATGGCACCAGAATATGCTACTGATGGATTATTTTCTGTGAAATCTGATGTCTTTAGCTTTGGAATTTTAGTGTTAGAGATTGTGTGTGGCAAGAGAAATAGAGGACTTTATCACACAGATAAGAATATTAACCTCGTTGGTCATGCATGGACAACATGGAAAGATGGTAAGGCATTAGAGTTGATTGACTCAAGGATGAAGGGGTCATGTGTTATATCAGAAGTACTACGTTGCCTCCATATCGGTCTTTTGTGTGTGCAACAATACCCAGAAGATAGACCTACAATGGCGTCCATTATTCTTATGTTGGAGAGCCACATGGAATTAGTTGAGCCTAAAGAACATGGCTTCATTCCTAGAAATGTTGTAGTTAAAGAAAATTTACACTTAAGTAAAAAGGATACAAGTTCATCCAATGATGTGACAATTACAATGTTAGAAGCTCGATGA 2448 0.386 MDILPFMILFACILSLSLKISVANDSINVLQSLRDGKTLVSKGGKFELGFFNPGSSQKRYLGIWYKNIPVQTVVWVANRVNPINDSLGILTVNSTGNLVLTQNGSLVWCTNSHKQAQNPVVELLDSGNLVIRNEADTNPEAYLWQSFDYPSDTVLPEMKIGWDLRTGLERRLTSWKSSDDPSLGNGYYVMNNCSYPDMYTLERTQKLSRFGPWNGMYFSGIPGLQNNTIFGISFVSNKDEVYSSFSIFSNITIARTVINQTGYIYRYVWVEDDGDWRTYRSFPLEFCDTYGLCGPYGNCLSTQSQACQCLKGFRPKSPEAWISSGWSQGCVRNKPLNCKHKLTEGFVKFKGLKVPDTTHTWLDESIGLEECRVKCLNNCSCMAFTNSDIRGRGNGCVMWFGDLIDLKQFETGGQDLYIRMDASELEPVSSHKKNTPTIVASTIAAICGVLILSTYFICRFRRSSAGNELTRDDNEKNVDDLDIQLFDLATIMIATNNFSMENKIGEGGFGSVYKGVLMDGQEIAVKTLSRSSWQGEIEFINEVKLIAKLQHRNLVKLLGCFIQGQEKMLIYEYMASGSLDSFIFDDTKSKLLGWPQRLHIICGIARGLMYLHQDSRLRVIHRDLKASNVLLDENLSPKISDFGLARVFKGDQIEGNTSRVVGTYGYMAPEYATDGLFSVKSDVFSFGILVLEIVCGKRNRGLYHTDKNINLVGHAWTTWKDGKALELIDSRMKGSCVISEVLRCLHIGLLCVQQYPEDRPTMASIILMLESHMELVEPKEHGFIPRNVVVKENLHLSKKDTSSSNDVTITMLEAR 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01308 815 ProSiteProfiles PAN/Apple domain profile. 338 422 IPR003609 -
Cca04g01308 815 Pfam D-mannose binding lectin 72 176 IPR001480 -
Cca04g01308 815 Gene3D Transferase(Phosphotransferase) domain 1 574 782 - -
Cca04g01308 815 SMART ntp_6 341 420 IPR003609 -
Cca04g01308 815 SUPERFAMILY Protein kinase-like (PK-like) 482 770 IPR011009 -
Cca04g01308 815 Pfam S-locus glycoprotein domain 209 317 IPR000858 GO:0048544
Cca04g01308 815 PANTHER - 23 812 - -
Cca04g01308 815 CDD B_lectin 31 150 IPR001480 -
Cca04g01308 815 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 812 - -
Cca04g01308 815 Pfam PAN-like domain 340 406 IPR003609 -
Cca04g01308 815 ProSiteProfiles Bulb-type lectin domain profile. 24 144 IPR001480 -
Cca04g01308 815 Gene3D - 19 147 IPR036426 -
Cca04g01308 815 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Cca04g01308 815 PIRSF SRK 1 815 IPR024171 GO:0004674
Cca04g01308 815 CDD PAN_AP_plant 335 419 - -
Cca04g01308 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Cca04g01308 815 ProSitePatterns Protein kinases ATP-binding region signature. 504 526 IPR017441 GO:0005524
Cca04g01308 815 Pfam Protein tyrosine and serine/threonine kinase 499 767 IPR001245 GO:0004672|GO:0006468
Cca04g01308 815 Gene3D Phosphorylase Kinase; domain 1 462 573 - -
Cca04g01308 815 ProSiteProfiles Protein kinase domain profile. 498 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01308 815 SMART blect_4 30 150 IPR001480 -
Cca04g01308 815 CDD STKc_IRAK 504 770 - -
Cca04g01308 815 SMART serkin_6 498 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01308 Cca-Chr4 16474024 16478454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01308 455 809 Receptor kinase-like Gene Family AT4G23150 50.843 2.00e-119 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01308 PK_Tyr_Ser-Thr 2.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01308 - - gmx:100802962 1317.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01308 04 16474024 16478454 Cca04g01308 04 16474024 16478454 ECH