Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01307 ATGGAAAATCTTTCTTTCATGATTATGTTTGCATGCATACTTGTTCCCTCTATCATAGCTAATGATTCAATCAACGTGCTCCAATCCATGAGTGATGGTGAGACCTTGGTGTCGAAAGGTGAAATTTATGAACTTGGGTTTTTCAGCCCAGGTAGATCCCAGAAACGTTACCTAGGCATATGGTACAAGAATATCCCAATGCAAACAGTTGTTTGGGTTGCAAATAGGGAAAACCCTATCAATGATTCCTCAGGCATCTTAACAGTGAACTCCACAGGCAATCTTGTTCTCACCCAAAATGGGTCTCTTGTTTGGTACACCAACCCTCACCAACAAGCACTGAATCCAGTGGTGGAGCTCTTAGACAGTGGCAATCTTGTGATAAGAAATGAGGCAGAAACAGACCCAAAAGCGTTCTTGTGGCAAAGCTTTGAACATCCATCTGATACGTTTTTAGCAGGGATGAAGTTGGGATGGGACCTCAAAACTGATCAGGAACGGAAACTAACATCTTGGAAGAGTCCAGATGATCCATCACCAGGAGACGTTTCTAGGGTTTTAAAACTCTATAACTATCCTGAGTTTTATATAGTGAGAGGAGAACAAAAGTTGTTCAGATTTGGTCCTTGGAATGGCCTATATTTTAGTGGAGTACCAGATCTAAATATTACCATTTATGGCTTGAATTTTGTCAGAAATATAGATGAGATTTACTTCACGTATAGTATTCCAAATACTTCTTTCATCTCAAGAAGTGTAGTAAACCAAACAGGTATTATTTATCGCTATACATGGGTGGAAGAATATAAAAATTGGATATATAGAACCTTGCCAGGAGAGTTTTGTGATAATTATGGCTTTTGTGGACCCTATGGGAATTGCCTAAAATCACAAGCTTGCCAATGTTTAAAAGGTTTTAGTCCAAAGTCACAAGAAGCATGGAACTCGTCGAATTGGAGTCGAGGATGTGTCCGCAATACACCGTTAAGCTGCAAAGACAAACTCAAAGATGGATTTGTCAAATTTGAAGGCCTCAAAGTTCCAGACACTACACATACTTTGTTGGATGAGAGTATTGGTCTTAAGGAATGCAAAGACAAGTGCTTGAATAATTGTTCTTGTATGGCCTATACTAATTCAGACATAAGAGATGGTGGTAGTGGTTGTGTCATATGGTTCGGAGATCTCATTGACTTGAAACAACAAACTGTTGGGCAAGATTTATATGTGAGGATGCCTGCTTCAGAATTAGTCGGTTCCAATCCACCAGAACCTGTATACAGACACAAAAGGAATACACCAAAAATAGTTGCTTCCACTGTTGCTGCAATTTGTGGTGTTCTGTTACTAAGTTCATATTTTATCTACAGCATCCGGAGGAAGTACGCTGAGAAAAACAAGAGTCAGAAGGATGACATTAATTTACCAACATTTGATTTTTCATCCATATCCAGGGCCACAAATCACTTTTCACAGAATAACAAATTGGGACAAGGTGGCTTTGGAGTTGTGTACAAGGGCATGTTGCCAAATGGGCAAGAGATTGCAGTTAAAAGGCTTTCTAAAACTTCCATACAAGGCTTGGACGAGTTCAAAAATGAAGCCATGTTGATTGCAAAGCTTCAACATCGCAATCTTGTGAAGCTTTTTGGTTGTTCTATTCAACAAGATGAAAAGTTATTGATTTATGAATTCATGCCTAATAGAAGTTTGGACTACATTATTTTCGATTCAACAAGACGTGCCTTGTTAGATTGGGCTAAGAGATTTGATATTATTAATGGAATTGCTCGAGGACTTCTCTATCTTCATCACGACTCTAGACTAAAGATCATTCATAGGGATCTTAAAACTAGTAATGTTCTTCTTGATAGTAATATGAATCCAAAAATATCAGATTTTGGTATGGCTAGAATATTTGCTCTAAATCAAGATGAAGCAGACACAAATAAAGTAGTTGGGACATACGGTTATATGCCTCCTGAATATGCTGCACATGGATCTTTCTCGACCAAATCTGATGTCTTCAGTTTTGGTGTGATTGTGTTGGAGATAATAAGTGGGAGAAAGAATAGGAGATCTTATGACTCACAGCATAACCTAAATCTTCTGGGGCATGCATGGAGACTATGGATTGAAAACAGGCCAATGGAACTTGTGGATGACTTAGTGGATGATTTAGCCGGTCAATTTGAAATAATAAGATATATTCACATTGGTTTGTTATGCGTACAACAGAGACCACAAGATAGACCAGAGATGTCATCAGTAATTCTTATGTTGAATGGTGAAAAGTTATTACCCGAACCAAGCCAACCTGGGTTCTACACAGGAAAAGATTATTCAAACACGACACCTTCTTCAAGAAATATTGATTCGTATACCCTCAATGAAATCTCTGACACAATGTTGGAGGGAAGATAA 2424 0.3837 MENLSFMIMFACILVPSIIANDSINVLQSMSDGETLVSKGEIYELGFFSPGRSQKRYLGIWYKNIPMQTVVWVANRENPINDSSGILTVNSTGNLVLTQNGSLVWYTNPHQQALNPVVELLDSGNLVIRNEAETDPKAFLWQSFEHPSDTFLAGMKLGWDLKTDQERKLTSWKSPDDPSPGDVSRVLKLYNYPEFYIVRGEQKLFRFGPWNGLYFSGVPDLNITIYGLNFVRNIDEIYFTYSIPNTSFISRSVVNQTGIIYRYTWVEEYKNWIYRTLPGEFCDNYGFCGPYGNCLKSQACQCLKGFSPKSQEAWNSSNWSRGCVRNTPLSCKDKLKDGFVKFEGLKVPDTTHTLLDESIGLKECKDKCLNNCSCMAYTNSDIRDGGSGCVIWFGDLIDLKQQTVGQDLYVRMPASELVGSNPPEPVYRHKRNTPKIVASTVAAICGVLLLSSYFIYSIRRKYAEKNKSQKDDINLPTFDFSSISRATNHFSQNNKLGQGGFGVVYKGMLPNGQEIAVKRLSKTSIQGLDEFKNEAMLIAKLQHRNLVKLFGCSIQQDEKLLIYEFMPNRSLDYIIFDSTRRALLDWAKRFDIINGIARGLLYLHHDSRLKIIHRDLKTSNVLLDSNMNPKISDFGMARIFALNQDEADTNKVVGTYGYMPPEYAAHGSFSTKSDVFSFGVIVLEIISGRKNRRSYDSQHNLNLLGHAWRLWIENRPMELVDDLVDDLAGQFEIIRYIHIGLLCVQQRPQDRPEMSSVILMLNGEKLLPEPSQPGFYTGKDYSNTTPSSRNIDSYTLNEISDTMLEGR 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01307 807 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 178 IPR036426 -
Cca04g01307 807 PIRSF SRK 1 807 IPR024171 GO:0004674
Cca04g01307 807 Gene3D Phosphorylase Kinase; domain 1 463 565 - -
Cca04g01307 807 Pfam D-mannose binding lectin 69 173 IPR001480 -
Cca04g01307 807 Pfam PAN-like domain 333 399 IPR003609 -
Cca04g01307 807 SMART ntp_6 334 412 IPR003609 -
Cca04g01307 807 Pfam Protein kinase domain 491 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01307 807 Gene3D Transferase(Phosphotransferase) domain 1 566 767 - -
Cca04g01307 807 CDD B_lectin 28 147 IPR001480 -
Cca04g01307 807 CDD PAN_AP_plant 327 413 - -
Cca04g01307 807 Pfam S-locus glycoprotein domain 205 310 IPR000858 GO:0048544
Cca04g01307 807 SMART serkin_6 490 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01307 807 MobiDBLite consensus disorder prediction 770 790 - -
Cca04g01307 807 PANTHER - 17 802 - -
Cca04g01307 807 ProSitePatterns Protein kinases ATP-binding region signature. 496 518 IPR017441 GO:0005524
Cca04g01307 807 ProSiteProfiles PAN/Apple domain profile. 331 413 IPR003609 -
Cca04g01307 807 ProSiteProfiles Bulb-type lectin domain profile. 21 141 IPR001480 -
Cca04g01307 807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Cca04g01307 807 CDD STKc_IRAK 496 763 - -
Cca04g01307 807 Gene3D - 17 144 IPR036426 -
Cca04g01307 807 ProSiteProfiles Protein kinase domain profile. 490 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01307 807 MobiDBLite consensus disorder prediction 776 790 - -
Cca04g01307 807 SUPERFAMILY Protein kinase-like (PK-like) 471 761 IPR011009 -
Cca04g01307 807 SMART blect_4 27 147 IPR001480 -
Cca04g01307 807 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 17 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01307 Cca-Chr4 16448648 16454203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01307 436 775 Receptor kinase-like Gene Family AT4G23230 53.043 2.30e-125 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01307 Pkinase 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01307 - - gmx:100801916 1199.11