Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01304 ATGAAGTTTATTCGATTTCTAATGAGGATCGTAGTTTATATACTGTTTGTGCCCTCTCTCATGGTTTTCATAGCCGCGGACACATCATCCATTTCACATACACAGTCCCTCACTTATGGAGATACCATAGTTTCTTACCCACAAGGAACCTTTGAGCTTGGCTTCTTCAATCTTGGAAAACCCAACAAAACCTACCTAGGGATCCGCTACAAGAATATCCCACTTCGAAACGTTGTTTGGGTTGCAAACGTTGGCAAACCAATCAATGATTCCTCAGCCATCTTGAAACTAAACAGTTCTGGCAATTTGGTTTTAACACACAACAACATAGTGGTTTGGTCCACAGATTCTCCAAAAGCAGCACAGAATCCAGTGGCTGAACTCTTGGATTCTGGCAATCTTGTGATAAGAGATGAGAATTCAACAAAATCAAATCAAGAGGAATATCTGTGGCAAAGCTTTGATTACCCTTCTGATACAATGTTGCCAGGAATGAAGATTGGATGGGACCTCAAAAGAAATCGCAACAGAAACCTAATATCATGGAAGAGTAATGATGATCCAACCCCAGGAGACTTATCTTGGGGTATTGCAGTTCACCCCTATCCTGAGATCATTACAATGAAAGGAACAAAAAAGTACCAGAGAGTTGGACCATGGAATGGATTGCGCTTCAGTGGCATGCCAGAAATGTCGCCTAATCCAATTTACCACTACGAGTTTTTCTCCAACAAGGAAGAGGTTTATTACACATGGACCCTTCAGCAGTCCAGTTTGATAACAAGAGCAGTACTAAACCAAACCACTCTACAACGTATTCATTATATATGGTCAGATATTGATGCATCATGGGTAATATATTCAGCTTTGCCAGCTGACGAATGTGACTATTATGGGGTTTGTGGAGCCAATTCATATTGCAGAACTTCTGCTTCACCCATGTGTGAATGTTTGCAAGGGTTCAATCCCAAGTCTCCTGAAAAATGGAACTCAAAGGACTGGTCCCAAGGATGTGTCCTTAAACAACCACAAAGTTGCAAAGGTAACTACACGGATGAGTTTGACAAATATGAAGGCATGAAAGTACCAGAAACTACACATACTTGGCTGGATGAGAATATTGATTTAGCTGAATGTAAATCCAAATGCTTGAAAAATTGCTCTTGCATGGCTTATACTAATTCGAACATAAGTGGAGAAGGAAGTGGTTGTGTCCTTTGGTTTGGCGAACTATTTGACATAGTCATGCTTCCAACTGGCGGGCAAGATCTATATATCCGAATACCTGCTTCGGAGTTAGAGAAACATGGGCGCAACAAAATGGTGATGATTATAATTGCTACCACAATTGCTGTAGCTGGTGCGATACTGTTATTCAGCATTTTTGTCATATACAGAGTCCGAAGGAACATTGCTGAAAAGTCAAACACAAAAGTGAACATCGAAAGACAACTAGAAGATATGGATCTGCCATTGTTTGATCTTCTAACGATCACCACTGCCACTAATGATTTCTCATTGGAGAATAAGATTGGACAAGGTGGTTTTGGATGGGTATATAAGGGAAAATTAGACAATGGGCAAGAAATTGCTGTCAAGAGACTTTCAAGTAGTTCTGATCAAGGTATAGATGAATTTATAACAGAAGTAAAACTGATTGCAAAGCTTCAACATCGAAATCTTGTAAAGCTTTTAGGTTGTTGCTTTCAAGGAGAAGAAAAATTACTGATATATGAATACATGGTTAACGGCAGCCTAGATTCCTTCATTTTTGATCAATCAAAAGGTAAATTAATGGATTGGCAACGACGGTTCCATATAATATTTGGAATTGCTAGGGGACTTCTTTACCTTCACGAAGATTCACGATTAAGGATTATTCATAGAGATCTTAAAGCAAGTAACGTTTTACTTGATGAAAAGTTAAATCCCAAAATATCAGATTTTGGAATTGCTAGAGCTTTTGGAGGAGATCAAATTGAAGGAAATACAAATAGAGTAGTTGGAACTTATGGATACATGGCCCCTGAGTATGCTGTGGATGGATTATTTTCAATCAAATCGGACATCTTCAGTTTTGGCATTTTAATGATAGAAATAATATGTGGGAACAAAAATAGAGCTCTTTTTCATGGAAATCAGACTCTTAACCTTGTCGGATATGCATGGGCACTTTGGAAAGAGCAAAAGGCTTTGCAGTTGCTTGACTCTAGCATAAAGGACTCATGCATTATATCAGAAGTATTGCGATGCATTCATGTTAGTCTCTTGTGTGTGCAACAATGTCCGAACGATAGGCCAACCATGACCTCAGTAATTCAAATGTTAGGGAGTGAGATGGAATTGGTTGAACCAAAAGAGCCTGGTTTCTTTCCAAGGAGGATTGTGGATGAAGGAAATTTAAGCTCAGATCAGAACCAAGTGACTTCAAATGATGAATTAACCATTACCTCATTGAAAGGCCGCTGA 2469 0.3904 MKFIRFLMRIVVYILFVPSLMVFIAADTSSISHTQSLTYGDTIVSYPQGTFELGFFNLGKPNKTYLGIRYKNIPLRNVVWVANVGKPINDSSAILKLNSSGNLVLTHNNIVVWSTDSPKAAQNPVAELLDSGNLVIRDENSTKSNQEEYLWQSFDYPSDTMLPGMKIGWDLKRNRNRNLISWKSNDDPTPGDLSWGIAVHPYPEIITMKGTKKYQRVGPWNGLRFSGMPEMSPNPIYHYEFFSNKEEVYYTWTLQQSSLITRAVLNQTTLQRIHYIWSDIDASWVIYSALPADECDYYGVCGANSYCRTSASPMCECLQGFNPKSPEKWNSKDWSQGCVLKQPQSCKGNYTDEFDKYEGMKVPETTHTWLDENIDLAECKSKCLKNCSCMAYTNSNISGEGSGCVLWFGELFDIVMLPTGGQDLYIRIPASELEKHGRNKMVMIIIATTIAVAGAILLFSIFVIYRVRRNIAEKSNTKVNIERQLEDMDLPLFDLLTITTATNDFSLENKIGQGGFGWVYKGKLDNGQEIAVKRLSSSSDQGIDEFITEVKLIAKLQHRNLVKLLGCCFQGEEKLLIYEYMVNGSLDSFIFDQSKGKLMDWQRRFHIIFGIARGLLYLHEDSRLRIIHRDLKASNVLLDEKLNPKISDFGIARAFGGDQIEGNTNRVVGTYGYMAPEYAVDGLFSIKSDIFSFGILMIEIICGNKNRALFHGNQTLNLVGYAWALWKEQKALQLLDSSIKDSCIISEVLRCIHVSLLCVQQCPNDRPTMTSVIQMLGSEMELVEPKEPGFFPRRIVDEGNLSSDQNQVTSNDELTITSLKGR 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01304 822 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 38 821 - -
Cca04g01304 822 Gene3D - 21 154 IPR036426 -
Cca04g01304 822 Pfam S-locus glycoprotein domain 216 325 IPR000858 GO:0048544
Cca04g01304 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Cca04g01304 822 CDD STKc_IRAK 511 776 - -
Cca04g01304 822 ProSiteProfiles Bulb-type lectin domain profile. 28 149 IPR001480 -
Cca04g01304 822 CDD PAN_AP_plant 342 429 - -
Cca04g01304 822 Pfam PAN-like domain 346 414 IPR003609 -
Cca04g01304 822 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 38 821 - -
Cca04g01304 822 ProSiteProfiles EGF-like domain profile. 291 327 IPR000742 -
Cca04g01304 822 ProSiteProfiles PAN/Apple domain profile. 346 429 IPR003609 -
Cca04g01304 822 ProSiteProfiles Protein kinase domain profile. 505 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01304 822 Gene3D Phosphorylase Kinase; domain 1 465 580 - -
Cca04g01304 822 Gene3D Transferase(Phosphotransferase) domain 1 581 786 - -
Cca04g01304 822 SMART ntp_6 349 428 IPR003609 -
Cca04g01304 822 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 188 IPR036426 -
Cca04g01304 822 PIRSF SRK 1 822 IPR024171 GO:0004674
Cca04g01304 822 Pfam D-mannose binding lectin 78 183 IPR001480 -
Cca04g01304 822 CDD B_lectin 34 157 IPR001480 -
Cca04g01304 822 SMART blect_4 34 157 IPR001480 -
Cca04g01304 822 SUPERFAMILY Protein kinase-like (PK-like) 489 776 IPR011009 -
Cca04g01304 822 SMART serkin_6 505 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01304 822 Pfam Protein tyrosine and serine/threonine kinase 506 776 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01304 Cca-Chr4 16406119 16436144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01304 434 805 Receptor kinase-like Gene Family AT4G23190 51.053 2.61e-124 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01304 PK_Tyr_Ser-Thr 1.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01304 - - gmx:100809353 1239.56