Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01303 CAACAGGGGCGCAACAAAAGTTTGACGATAATACTTGCTACCACGATTGTTGGAACTGGTGCGATACTGTTATTTTGCATTATTGTCATTTACAGAGTCCGAAGGAAAATTGCTGAAAAGTCAAAGGAAAAAGTGAACATCGAATGTCAACTAGAAGATATGGATCTGCCATTGTTTGATCTGCTGACAATCACCACAGCCACTAACGGTTTCTCATTGAATAATAAGATTGGAGAAGGTGGTTTTGGATCTGTATATAAGGGAAAATTAGAGGATGGGCGAGAAATTGCGGTGAAGAGACTATCAAGCAGTTCAGAACAGGGAATAACTGAGTTTATAACAGAAGTAAAACTGATTGCGAAGCTTCAACACCGAAATCTTGTAAAGCTTCTTGGATGTTGTGTTAAAGGAGAAGAAAAATTACTAATATATGAATACATGGTTAATGGTAGCCTGGATTCCTTCATTTTTGATAAAATAAAAGGTAAATTTCTAGATTGGCCCCAACGGTTCAACATAATACTTGGAATTGCAAGGGGACTCTTGTATCTTCATCAAGATTCCTGTTTAAGGATTATTCATAGAGATCTAAAAGCAAGTAACGTATTACTCGATGAAAAGTTAAATCCAAAAATATCAGATTTTGGATTGGCTAGAGCTTTTGGAGGAGACCAAACTGAAGGAAACACAAATAGGATAGCTGGAACTCATGGATACATGGCTCCAGAGTATGCTGTTGATGGCCTATTTTCAATCAAATCTGATGTTTTTAGCTTTGGTATTTTAATATTGGAGATAATATATGGAAACAAAAACAGAGCTCTTTGTCATGGAAATCAGAAATCTAACCTTGTTAGTTATGCATGGACAATTTGGAAAGAGCAAAATGCTTTGCAGTTGATTGACTCAAGCATAAAGGATTCATGTGTCAGGCCAGAAGTCATGCGATGCATCCATGTTAGTCTCTTGTGTGTGCAACAATATCCAGAGGATAGGCCAACCATGACTTCTGTAATTCAAATGTTAGGGAGTGAGACACAACTGGTTGAGCCAAAAGAGCCTGGTTTCTTTCCAAGGAGAATTTCAGATGAAGGAAATTTAAGCTCAAATTTAAACAAAATGACTTCAAATAATGAATTAACCATTACCTCCTTAAATGGCCGCTGA 1167 0.3693 QQGRNKSLTIILATTIVGTGAILLFCIIVIYRVRRKIAEKSKEKVNIECQLEDMDLPLFDLLTITTATNGFSLNNKIGEGGFGSVYKGKLEDGREIAVKRLSSSSEQGITEFITEVKLIAKLQHRNLVKLLGCCVKGEEKLLIYEYMVNGSLDSFIFDKIKGKFLDWPQRFNIILGIARGLLYLHQDSCLRIIHRDLKASNVLLDEKLNPKISDFGLARAFGGDQTEGNTNRIAGTHGYMAPEYAVDGLFSIKSDVFSFGILILEIIYGNKNRALCHGNQKSNLVSYAWTIWKEQNALQLIDSSIKDSCVRPEVMRCIHVSLLCVQQYPEDRPTMTSVIQMLGSETQLVEPKEPGFFPRRISDEGNLSSNLNKMTSNNELTITSLNGR 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01303 388 SUPERFAMILY Protein kinase-like (PK-like) 55 342 IPR011009 -
Cca04g01303 388 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 7 387 - -
Cca04g01303 388 Gene3D Transferase(Phosphotransferase) domain 1 147 353 - -
Cca04g01303 388 SMART serkin_6 71 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01303 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Cca04g01303 388 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Cca04g01303 388 ProSiteProfiles Protein kinase domain profile. 71 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01303 388 Pfam Protein tyrosine and serine/threonine kinase 72 342 IPR001245 GO:0004672|GO:0006468
Cca04g01303 388 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 7 387 - -
Cca04g01303 388 CDD STKc_IRAK 77 342 - -
Cca04g01303 388 Gene3D Phosphorylase Kinase; domain 1 31 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01303 Cca-Chr4 16357259 16389767 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01303 7 359 Receptor kinase-like Gene Family AT4G23190 53.203 1.14e-128 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01303 PK_Tyr_Ser-Thr 6.7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01303 - - gmx:100807748 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01303 04 16357259 16389767 Cca04g01303 04 16357259 16389767 ECH