Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01302 ATGGATTTTTTTTCTTTCATGATTATTGTTACTTATATGGTTCTTCCCTCTCTCAAATTTTCAGCAGCTATAGACAGTGTGTCACAGACACAGTCTATAAGTGACGGCAAGACCTTAGTGTCCAAAGGTGGAGTGTTTGAGCTTGGTTTCTTCAGCCTAGGTAGCACCACAAAGCGTTACCTAGGAATTTGGTATAAAAATATTCCTATTGACGGAGTTGTTTGGGTGGCAAACCGGGCAAACCCGATCAACGATTCCTCAGGAATCTTGACATTTACCAGCACAGGTAATCTTGAACTCAGACAAAATGATTCTGTTGTTTGGTCAACAACGTACCAAAAACAAGCACAGAATCCAGTGGCACAGATTTTGGACAGTGGAAATCTTGTGATAAGAAATGAGGGAGACACAAACCCAGACATGTACCTGTGGCAAAGCTTTGACTATCCTTCTGATACACTTTTGCCTGGGATGAAGTTGGGATGGGACCTCCGAACCGGATTGGAACGAAAATTAACGTCTTGGACGAGTCCAGATGATCCATCACTAGGAAATTTTTCTTGGGGTTTAATGCTATATAGTTATCCAGAGTTTTATGTGATGAAAGGAACACAAAAGTACTACCGAACCGGACCATGGAATGGACTTCAATTTAGTGGCGTGTCAGATCAAATTCAAAACCAAAATGCCATGTTCGTCTCCAATGATGAGGAGTTGTTCTACTCATATACCCTAATCAACAATTCTGTCACTGTGAAAGTCAAAATAATCAATGCTAGTTTCCAAACCCATGTATGGGAGAAGGAAAAGGAAAAGTGGAGGGTTAACATAATTACCCCGGGTGACTTCTGTGATATGTATGGTCTCTGTGGAGCCAACGCGGTTTGCAGCATCACAGACTCAAGAGTGTGCCAATGTTTAGAAGGATTCAGTCCAAAGTCACAACAGGAATGGAACACAAGCAATTGGAGACAAGGATGCATTCAGAATGAACCATTTCACTGCAAAGACAGAGATGTGTTTGTCAAATATGTAGGCATGAAAGTACCAGAAACTACACATACTTGGGTGGATGAGAATATAAATTTAGATGAATGCAGAGCCAGATGCTCCAATAATTGCTCTTGCATGGCTTTTACTAATTCGGACATAAGAGGAGCAGGTAGTGGTTGTGTCCTTTGGTTTGGTGAACTATTTGACGTTAAAGAGTCTCAAACTGGTGGGCAAGATCTGTATATCCGGATGTCTGGCTCGGAATTTGAGCAAGATGGGCACAACAAAAGCGTTACCATAATAATTGCTACCACAATTGCTGCAACTGGTGCCATAATTTTGTTTTGCATATTTGTCATCTGCAGAGTCCGAAGGAACAATGCAGAGTCCAAGGTAAAAGATAACATCGAAAGCCAGCTAGGAGATCTGGATCTGCCATTGTTTGATCTACTAACAATCACTACTGCCACTAACAATTTCTCCTTGAATAATAAGATTGGACAAGGTGGTTTCGGACAAGTATACAAGGGAAAATTAGCAGATGGACGAGATATTGCTGTCAAGAGACTTTCAAGAGGTTCTGGACAAGGAATAACTGAGTTTATAACAGAAGTAAAACTGATAGCAAAGCTTCAACACCGAAATCTTGTAAAGCTCCTCGGCTGTTGCTTTCAAGGAGACGAAAAATTACTAATATACGAATTCATGGTTAACGGCAGCCTAGACTCCATCATTTTTGATCAAGTAAAAGGTAAATTTTTAGATTGGCCCCAACGCTTTCACATAATATTTGGAATCGCTAGAGGGCTTGTGTATCTTCATCAAGATTCCCGATTAAGGATTATTCATAGAGATTTAAAAGCAAGTAACGTTTTACTCGATGAAAAATTAAATCCAAAAATATCAGATTTTGGAATGGCTAGAACTTTTGGAGGAGAACAAACTGAAGGAAACACAAATAGAATTGTTGGGACTTATGGATACATGGCCCCTGAGTATGCTGTTGATGGACTATTTTCCATCAAATCAGACGTTTTTAGCTTTGGCATTTTATTGTTGGAGATTATATGTGGGAACAAAAATAGAGCTCTTTGTCATGGAAACGAAACTCTAAACCTTGTTGGTTATGCATGGACACTTTGGAAAGAGCAAAATGCTTTACAGTTGATTGACTCAAGCATAAAGGACTCATGTGTCATCCAAGAAGTGCGTCGGTGCATCCATGTTAGTCTCTTGTGCGTGCAACAATACCCAGAGGATAGGCCAACCATGACCTCAGTAATTCAAATGTTAGGGAGTGAGATGGAAATGGTTGAGCCAAAAGAGCCTGGTTTCTTTCCAAAGAGGATCTCAGATGAAGAAAATTCAAGCTCAAATCCAAATCAAATGACTTCAAATGATAAATTAACCATTACCTCATTAGATGGTCGATGA 2427 0.3993 MDFFSFMIIVTYMVLPSLKFSAAIDSVSQTQSISDGKTLVSKGGVFELGFFSLGSTTKRYLGIWYKNIPIDGVVWVANRANPINDSSGILTFTSTGNLELRQNDSVVWSTTYQKQAQNPVAQILDSGNLVIRNEGDTNPDMYLWQSFDYPSDTLLPGMKLGWDLRTGLERKLTSWTSPDDPSLGNFSWGLMLYSYPEFYVMKGTQKYYRTGPWNGLQFSGVSDQIQNQNAMFVSNDEELFYSYTLINNSVTVKVKIINASFQTHVWEKEKEKWRVNIITPGDFCDMYGLCGANAVCSITDSRVCQCLEGFSPKSQQEWNTSNWRQGCIQNEPFHCKDRDVFVKYVGMKVPETTHTWVDENINLDECRARCSNNCSCMAFTNSDIRGAGSGCVLWFGELFDVKESQTGGQDLYIRMSGSEFEQDGHNKSVTIIIATTIAATGAIILFCIFVICRVRRNNAESKVKDNIESQLGDLDLPLFDLLTITTATNNFSLNNKIGQGGFGQVYKGKLADGRDIAVKRLSRGSGQGITEFITEVKLIAKLQHRNLVKLLGCCFQGDEKLLIYEFMVNGSLDSIIFDQVKGKFLDWPQRFHIIFGIARGLVYLHQDSRLRIIHRDLKASNVLLDEKLNPKISDFGMARTFGGEQTEGNTNRIVGTYGYMAPEYAVDGLFSIKSDVFSFGILLLEIICGNKNRALCHGNETLNLVGYAWTLWKEQNALQLIDSSIKDSCVIQEVRRCIHVSLLCVQQYPEDRPTMTSVIQMLGSEMEMVEPKEPGFFPKRISDEENSSSNPNQMTSNDKLTITSLDGR 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01302 808 Gene3D Phosphorylase Kinase; domain 1 466 566 - -
Cca04g01302 808 ProSiteProfiles Protein kinase domain profile. 491 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01302 808 SMART ntp_6 336 415 IPR003609 -
Cca04g01302 808 SMART serkin_6 491 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01302 808 CDD STKc_IRAK 497 762 - -
Cca04g01302 808 Pfam S-locus glycoprotein domain 208 314 IPR000858 GO:0048544
Cca04g01302 808 PIRSF SRK 1 808 IPR024171 GO:0004674
Cca04g01302 808 CDD B_lectin 30 150 IPR001480 -
Cca04g01302 808 MobiDBLite consensus disorder prediction 782 808 - -
Cca04g01302 808 Pfam Protein tyrosine and serine/threonine kinase 492 762 IPR001245 GO:0004672|GO:0006468
Cca04g01302 808 ProSiteProfiles PAN/Apple domain profile. 335 416 IPR003609 -
Cca04g01302 808 SMART blect_4 30 150 IPR001480 -
Cca04g01302 808 ProSiteProfiles Bulb-type lectin domain profile. 24 144 IPR001480 -
Cca04g01302 808 Pfam PAN-like domain 335 401 IPR003609 -
Cca04g01302 808 SUPERFAMILY Protein kinase-like (PK-like) 469 762 IPR011009 -
Cca04g01302 808 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Cca04g01302 808 ProSiteProfiles EGF-like domain profile. 280 316 IPR000742 -
Cca04g01302 808 MobiDBLite consensus disorder prediction 774 808 - -
Cca04g01302 808 CDD PAN_AP_plant 336 414 - -
Cca04g01302 808 Gene3D - 20 147 IPR036426 -
Cca04g01302 808 ProSitePatterns Protein kinases ATP-binding region signature. 497 519 IPR017441 GO:0005524
Cca04g01302 808 Gene3D Transferase(Phosphotransferase) domain 1 567 773 - -
Cca04g01302 808 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 33 807 - -
Cca04g01302 808 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 33 807 - -
Cca04g01302 808 Pfam D-mannose binding lectin 73 175 IPR001480 -
Cca04g01302 808 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01302 Cca-Chr4 16353063 16356956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01302 423 779 Receptor kinase-like Gene Family AT4G23190 52.078 7.25e-127 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01302 PK_Tyr_Ser-Thr 1.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01302 - - gmx:100812007 1209.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01030 10 12590178 12603429 Cca04g01302 04 16353063 16356956 PCT