Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01301 ATGAAGTTCATTCTTTCTCTGATGAGAATCATAGTTTATATACTGTTTCTCCCTTCTCTCGTAGTTTTCATAGCAGCGGACACATCATCCACTTCACAGTTCCAATCCCTAAGTTATGAAGAGAAAGAGACCATAGTTTCCCCAAATGGAATCTTTGAACTTGGTTTTTTCCATCTTGGAAATCCCAACAAAAGCTACCTCGCTATTCGTTACAAGAGTTACCCTGATCAAACATTTATTTGGGTTGCAAACGGTAGCTACCCTATCAATGACTCCTCAGCCATGTTGACACTAAACAGTTCTTCTGGCAGTTTGGTCCTCACACACACCAACAAGGTTGTTTGGTCAAGTTCTCCAAAAGTGGCACATAATCCAGTGGCAGAGTTATTAGACACTGGAAACCTTGTGATAAGAGAGAAAAATGAAGCAAAGGTAGAAGTAGAAGGGGAAGCATATCTATGGCAAAGTTTTGACTACCCTTCTAATACAATGTTGGCTGGGATGAAGATTGGATGGGACCTTAAAAGGAATCTAAATAGAAGTCTCATAGCTTGGAAGAGTGGTGATGATCCAACCCCAGGTGACTTATCATGGGGTATTTTGTTGCATCCCTATCCTGAGATCTATATGATGAAGGGAACAAAAAAGTATCACAGGCTTGGACCATGGAATGGTGTGCGTTTCAGTGGCATGCCAGAAATGGTGCCTAATCCTGTTTTTAGTTACAAGTTTGTCTCCAACGAGGATGAGGTTTATTACATGTGGACTTTGCAAACTAACTTGATAACCAAAGTGGTGCTTAACCAAACAACGGAAGATCGTCCTCGCTATGTGTGGTCAGATACTGATAAAACATGGAACTTTTACTCAACCATGCCAGGAGGAGAGTATTGTGACCATTATGGCGTTTGTGGGGCCAATTCATTCTGCAGCAGCACTGCATCACCAATGTGTGAGTGCTTAAAAGGGTACAAGCCTATGTCTCCTGAAAAATGGAACTCAATAAACTGGACACAAGGATGTGGCCTTAAACATCAATTGACTTGCATGAATGATGGTTTTGCCTCTGTTGATGGTTTGAAAGTGCCGGATACTACAAATACGTCTGTGGATGAAACTATTGATCTTGAGAAGTGCAGAAAAAAGTGCTTGAAGGATTGTTCATGCATGGCATATACCAATTCAAATATAAGTGGAGCAGGAAGTGGCTGTGTCATGTGGTTTGGTGATTTATTTGACATCAAACTGTATCCAGCTTCAGGAAGTGGGCAGCGTCTATATATAAGGTTGCATCCATCAGAACTAGATTCTATCAAGCACAAGAAGCCTACAAAAATATTTGTAACCTCCGGTGCTGCAGCTATAGCAATTATACTTGCTATTTATTTTGTCTACAGAAGGAAAATTTATGAAAAGTCAAAGGAAGAAAATAACTATGAAAATTATATGGATGATCTGGATCTCCCATTGCTTGATTTTTCAGTAATCATTGCTGCTACGGGTAACTTTTCAGAGGGGAACAAGATTGGAGAAGGAGGCTTTGGATCCGTATATTGGGGAAAATTAACCAGTGGATTAGAAATTGCTGTGAAGAGACTTTCAAAGAACTCGGATCAAGGAATGAGTGAGTTCGTGAATGAAGTAAAACTGATTGCAAAAGTTCAACACCGAAATCTTGTAAAGCTTCTTGGATGCTGCATTCAAAAACAAGAAAAAATGTTAGTTTATGAATACATGACCAACGGCAGCCTTGACTATTTCATTTTTGATCGCACCAAAGGGAAATTGCTAGATTGGCAAAAGCGTTTTCACATAATTTGTGGCATTGCTCGAGGACTTATGTATCTTCATCAAGATTCTCGATTGAGAATTATCCATAGAGATCTCAAAGCAAGCAATATTTTACTAGATGATACTTTGAATCCCAAAATATCAGATTTTGGAATGGCTAGAACTTTTGGTGGGGAGGATATCGAAGGAAACACAAATAGAATTGTTGGAACATATGGATACATGGCACCAGAATACGCTATCGAAGGACAATTTTCTGTAAAATCAGATGTATTTAGCTTCGGTATCTTACTTTTGGAGATTATATGTGGGAAGAAAAATAGAAGTTATAGTGGAAAGCAAGTCGTGAACCTTGTTGATCATGTGTGGACCCTTTGGGAAAAGAACATGACATTACAGATAATTGATCCAAATATGGAGGATTCATGTATTGCATCTGAAGTATTACGTTTCATCCATGTTGGGCTCTTGTGCATTCAACAATACGCAGAGGACAGGCCCACTATGACCTCAGTGGTTCTAATGTTGGGGAGTGACATGGAATTGGATGAGCCTAAAAAGCCCGGTTTTTCTACGAAGAAGGAATCTAATGAATCAAATTCGCACTCATGTAGTACGACCAACTCAATGTCCGTAACATTATTAACTGCTCGGTGA 2448 0.3946 MKFILSLMRIIVYILFLPSLVVFIAADTSSTSQFQSLSYEEKETIVSPNGIFELGFFHLGNPNKSYLAIRYKSYPDQTFIWVANGSYPINDSSAMLTLNSSSGSLVLTHTNKVVWSSSPKVAHNPVAELLDTGNLVIREKNEAKVEVEGEAYLWQSFDYPSNTMLAGMKIGWDLKRNLNRSLIAWKSGDDPTPGDLSWGILLHPYPEIYMMKGTKKYHRLGPWNGVRFSGMPEMVPNPVFSYKFVSNEDEVYYMWTLQTNLITKVVLNQTTEDRPRYVWSDTDKTWNFYSTMPGGEYCDHYGVCGANSFCSSTASPMCECLKGYKPMSPEKWNSINWTQGCGLKHQLTCMNDGFASVDGLKVPDTTNTSVDETIDLEKCRKKCLKDCSCMAYTNSNISGAGSGCVMWFGDLFDIKLYPASGSGQRLYIRLHPSELDSIKHKKPTKIFVTSGAAAIAIILAIYFVYRRKIYEKSKEENNYENYMDDLDLPLLDFSVIIAATGNFSEGNKIGEGGFGSVYWGKLTSGLEIAVKRLSKNSDQGMSEFVNEVKLIAKVQHRNLVKLLGCCIQKQEKMLVYEYMTNGSLDYFIFDRTKGKLLDWQKRFHIICGIARGLMYLHQDSRLRIIHRDLKASNILLDDTLNPKISDFGMARTFGGEDIEGNTNRIVGTYGYMAPEYAIEGQFSVKSDVFSFGILLLEIICGKKNRSYSGKQVVNLVDHVWTLWEKNMTLQIIDPNMEDSCIASEVLRFIHVGLLCIQQYAEDRPTMTSVVLMLGSDMELDEPKKPGFSTKKESNESNSHSCSTTNSMSVTLLTAR 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01301 815 ProSiteProfiles PAN/Apple domain profile. 349 431 IPR003609 -
Cca04g01301 815 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 38 814 - -
Cca04g01301 815 PIRSF SRK 1 815 IPR024171 GO:0004674
Cca04g01301 815 CDD PAN_AP_plant 345 430 - -
Cca04g01301 815 CDD STKc_IRAK 509 773 - -
Cca04g01301 815 SUPERFAMILY Protein kinase-like (PK-like) 490 787 IPR011009 -
Cca04g01301 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Cca04g01301 815 CDD B_lectin 43 160 IPR001480 -
Cca04g01301 815 MobiDBLite consensus disorder prediction 781 815 - -
Cca04g01301 815 SMART serkin_6 503 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01301 815 MobiDBLite consensus disorder prediction 791 815 - -
Cca04g01301 815 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 191 IPR036426 -
Cca04g01301 815 SMART blect_4 36 160 IPR001480 -
Cca04g01301 815 Pfam Protein tyrosine and serine/threonine kinase 506 770 IPR001245 GO:0004672|GO:0006468
Cca04g01301 815 Gene3D Phosphorylase Kinase; domain 1 464 578 - -
Cca04g01301 815 ProSiteProfiles Bulb-type lectin domain profile. 30 150 IPR001480 -
Cca04g01301 815 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 38 814 - -
Cca04g01301 815 ProSiteProfiles Protein kinase domain profile. 503 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01301 815 ProSitePatterns Protein kinases ATP-binding region signature. 509 531 IPR017441 GO:0005524
Cca04g01301 815 Pfam PAN-like domain 349 414 IPR003609 -
Cca04g01301 815 Gene3D - 25 157 IPR036426 -
Cca04g01301 815 Gene3D Transferase(Phosphotransferase) domain 1 579 797 - -
Cca04g01301 815 Pfam D-mannose binding lectin 78 186 IPR001480 -
Cca04g01301 815 Pfam S-locus glycoprotein domain 219 327 IPR000858 GO:0048544
Cca04g01301 815 SMART ntp_6 349 430 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01301 Cca-Chr4 16297141 16300796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01301 454 815 Receptor kinase-like Gene Family AT3G45860 50.529 4.03e-121 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01301 PK_Tyr_Ser-Thr 8.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01301 - - gmx:100810407 1337.01