Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01300 ATGAATTTTACACTTTCTCTGATGAGTATCATACTTTATATACTGTTTCTGTTTCTCTCTTCTACCGTAGTTTCCATAGCTGCGGACACATCATCAATTTCACAGTCCCAACCCCTCAGTTATGGAAAGACAATGGTTCCCCCTCGTGGAATCTTTGAGCTTGGATTCTTCAATCTAGGAAATCCCAACAAAATCTACCTCGGGATTCGGTATAAGAATATTTCACTTCAAAACGTTGTTTGGGTTGCAAACGGTGGCAACCCTGTCAAAGATTCCACTGTCATCTTGAAACTGAACAGTTCTGGCAATTTGGTCCTCACATACAACAACACGATTGTCTGGTCCACAAGTTCTCCAAAAGCAGCACAGAATCCAGTGGCAGAGCTCTTGGATTCTGGCAATCTTGTtattgggaaaaacccaaCAAAATCAAATCCAAAGGCATATATGTGGCAAAGCTTTGATTACCCTTCTAATACAATGTTGGCTGGGATGAAGATTGGATGGGACCTTAAAAGGAATCTAAGTAGAAGTCTCATAGCTTGGAAGAGTGGTGATGATCCAACCCCAGGTGACTTATCATGGGGTATTTTGTTGCATCCCTATCCTGAGATCTATATGATGAAGGGGACAAAATACTACCACAGGCTTGGACCATGGAATGGTTTGCGTTTCAGTGGCAGGCCATGGCCAGAAATGACGAATAATAATAGCTTTTTCCATTACCAGTTTGTCTCCAACAAGGAAGAGGTTTATTACACATGGACCCTCAAGCAGACTAGATTATTATCAAAAGTGGTACTTGACCAATTCACACAAGAACGTGTTCGTTATAAATGGTCAGAGACTGATAAATCATGGAGGATATATTCAACTATGCCAGAAGATGGCTGTGACCATTATGGCCTTTGTAAGGCCAATGCATTTTGCAGCAGTACTTCATCACCAGTATGTGAGTGTTTAAAAGGGTTCAAGCCTAAGTCTCCGAAAGAATGGAGCTCAATGATCTGGACCCAAGGCTGTGTCCTGAAACATCCGTTGAGTTGCAAGTATGATGGGTTTTCCCAGGTAGATGGCTTGAAAGTGCCAGATACTAAAAGAACATCTGTTGATGAGACTATTGATCTTGAGAAGTGCAGAAAAAAGTGCTTGAATGATTGTTCCTGTATGGCATATACAAATACAAATATAAGTGGAACAGGAAGTGGCTGTGTCATGTGGTTTGGTGATTTAATTGACATCAAACAGTATCCAGTTCCAGAAAATGGGCAGCGTCTATATATAAGGTTGCCTCCTTCAGAATTAGACAGTGAAGAGTCTATTAGGCGCAAGAACTATAAAATAATACTTGTAACCTCCTCTGCTGCAACTTTAGGAGTTATGCTTGCTATTTATTTCGTCTACAGAAGGAAATTTTCTGATAGATCGAAGACAAAAGATAACATTGAAAGACAGCTAGAAGATCTGGATGTGCCATTGTTTGATCTGCTAACAATCACTAATGCCACTAACAATTTCTCCTTGAATAATAAGATTGGACAAGGTGGTTTTGGACGAGTATACAAGGGACAATTAGCTGATGGACGAGATGTTGCTGTCAAGAGACTTTCAAGCGGTTCTGGACAAGGAATAACTGAGTTCATAACAGAAGTAAAACTGATAGCAAAGCTTCAACACCGAAACCTTGTAAAGCTCCTTGGTTGTTGCTTTCGAGGACAGGAAAAATTACTGATATATGAATACATGGTTAATGGCAGCCTAGACTCCTTCATTTTTGATCAAATAAAAGGTAAGTTACTCGACTGGCCCCGACGCTTTCAAATAATATTTGGAATCGCTAGAGGATTTTTGTATCTTCATCAAGATTCACGATTAAAGATAATTCCTAGAGATCTCAAAGCAAGTAACGTTTTACTCGATGAAAAGTTAAATCCAAAAATATCAGATTTTGGAATGGCTAAAGCATTTGGAGGAGACCAAACAGAAGGCAATACAAACATAGTAGTTGGGACTTATGGATACATGGCTCCAGAATATGCTGTTGATGGACTATTTTCAATCAAATCTGATGTTTTTAGCTTTGGTATTTTGTTGTTGGAGATTGTATGTGGAAGCAAAAATAGAGCCCTTTTCCATAGAAACCAGACTCTTAACCTTGTTGGTTATGCATGGACACTTTGGAAAGAGCATAATGTTCTACAATTGATTGACTCAAGCATAAAGGACTCGTGTGTTATCCCAGAAGTATTGCGATGCATCCATGTAAGTCTCTTGTGCGTGCAACAATGCCCAGATGATAGGCCAACCATGACCTCAGTAATTCAAATGTTAGGGTGTGAGATGGAACTAGTTGAGCCACATGAGCCTGGTTTCTTTCCAAGGAGGATTTCAGAAGAAGGAAAATTATGCACAAATCTAAACCAAATGACTTCAAATGATGAATTAACCATTAGCTGGTTAGATGGTCGGTGA 2472 0.3936 MNFTLSLMSIILYILFLFLSSTVVSIAADTSSISQSQPLSYGKTMVPPRGIFELGFFNLGNPNKIYLGIRYKNISLQNVVWVANGGNPVKDSTVILKLNSSGNLVLTYNNTIVWSTSSPKAAQNPVAELLDSGNLVIGKNPTKSNPKAYMWQSFDYPSNTMLAGMKIGWDLKRNLSRSLIAWKSGDDPTPGDLSWGILLHPYPEIYMMKGTKYYHRLGPWNGLRFSGRPWPEMTNNNSFFHYQFVSNKEEVYYTWTLKQTRLLSKVVLDQFTQERVRYKWSETDKSWRIYSTMPEDGCDHYGLCKANAFCSSTSSPVCECLKGFKPKSPKEWSSMIWTQGCVLKHPLSCKYDGFSQVDGLKVPDTKRTSVDETIDLEKCRKKCLNDCSCMAYTNTNISGTGSGCVMWFGDLIDIKQYPVPENGQRLYIRLPPSELDSEESIRRKNYKIILVTSSAATLGVMLAIYFVYRRKFSDRSKTKDNIERQLEDLDVPLFDLLTITNATNNFSLNNKIGQGGFGRVYKGQLADGRDVAVKRLSSGSGQGITEFITEVKLIAKLQHRNLVKLLGCCFRGQEKLLIYEYMVNGSLDSFIFDQIKGKLLDWPRRFQIIFGIARGFLYLHQDSRLKIIPRDLKASNVLLDEKLNPKISDFGMAKAFGGDQTEGNTNIVVGTYGYMAPEYAVDGLFSIKSDVFSFGILLLEIVCGSKNRALFHRNQTLNLVGYAWTLWKEHNVLQLIDSSIKDSCVIPEVLRCIHVSLLCVQQCPDDRPTMTSVIQMLGCEMELVEPHEPGFFPRRISEEGKLCTNLNQMTSNDELTISWLDGR 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01300 823 Gene3D - 24 154 IPR036426 -
Cca04g01300 823 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 39 822 - -
Cca04g01300 823 SUPERFAMILY Protein kinase-like (PK-like) 486 777 IPR011009 -
Cca04g01300 823 Gene3D Transferase(Phosphotransferase) domain 1 582 785 - -
Cca04g01300 823 ProSiteProfiles Protein kinase domain profile. 506 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01300 823 SMART ntp_6 349 430 IPR003609 -
Cca04g01300 823 Pfam PAN-like domain 349 414 IPR003609 -
Cca04g01300 823 SMART blect_4 36 157 IPR001480 -
Cca04g01300 823 PIRSF SRK 1 823 IPR024171 GO:0004674
Cca04g01300 823 Gene3D Phosphorylase Kinase; domain 1 467 581 - -
Cca04g01300 823 CDD B_lectin 36 157 IPR001480 -
Cca04g01300 823 ProSiteProfiles Bulb-type lectin domain profile. 30 150 IPR001480 -
Cca04g01300 823 ProSitePatterns Protein kinases ATP-binding region signature. 512 534 IPR017441 GO:0005524
Cca04g01300 823 ProSiteProfiles PAN/Apple domain profile. 349 431 IPR003609 -
Cca04g01300 823 CDD PAN_AP_plant 345 431 - -
Cca04g01300 823 SMART serkin_6 506 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01300 823 Pfam D-mannose binding lectin 79 183 IPR001480 -
Cca04g01300 823 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 188 IPR036426 -
Cca04g01300 823 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 39 822 - -
Cca04g01300 823 Pfam Protein tyrosine and serine/threonine kinase 507 777 IPR001245 GO:0004672|GO:0006468
Cca04g01300 823 Pfam S-locus glycoprotein domain 216 328 IPR000858 GO:0048544
Cca04g01300 823 CDD STKc_IRAK 512 777 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01300 Cca-Chr4 16281190 16285201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01300 448 794 Receptor kinase-like Gene Family AT4G23190 51.567 4.44e-119 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01300 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01300 - - gmx:100809353 1285.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01028 10 12561318 12564958 Cca04g01300 04 16281190 16285201 PCT