Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01299 ATGGAAATTCTTTCTTTCATGATTATGGTTGCTTGGTCACTCGTTCCCTGTATCATAGCAAATGATTCTATTAACGTATCCCAATTTATGAGTGATGGGAAAACCTTGGTGTCAAAAGGTGGAAAGTTCGAACTTGGATTTTTCAGCCCAGGCAGTTCCCAGAAACGTTACCTTGGCATTTGGTACAAGAATATCCCAATGCAAACAGTTGTTTGGGTTGCAAATAGGGAAAACCCTATCAATGATTCCTCAGGCATCTTAACAGTGAACTCCACAGGCAATCTTGTTCTCACCCAAAATGGGTCTCTTGTTTGGTACACCAACTCTCACAAACAAGCACAGAATCCAGTGGTGGAGCTCTTGGATAGTGGCAATCTTGTGATAGGAAATGAAGGAGACACGGACACAGAAGGTTACTTGTGGCAAAGCTTTGACTATCCTTCTGATACACTCTTGCCAGGGATGAAGTTGGGAAGTGACCTCAGAACTGGTTTGCAACGGAAATATATTGCATGGAAGAGTACAGATGATCCATCACCAGGAGATGTTTATAGGGTTTTGAAACTCTATAACTATCCTGAGTTTTATTTGATGAACGGAACAAAAAAGTTGTTCCGTTATGGACCTTGGAATGGCCAATGTTTTAGTGGAATGACAGATCTACTAAACAACACCTATATTTTTGGCTTGAATTTTGGCTTGAATTTTGTGAGCAATAAGGATGAGATTTACACCACCTTTAGCCTCGTAAGTGATTATGTCATCACCAGAACTGTGACAAACCAATCAGGTTCAATTTCTCGTTATGTTTGGGCGGTGGGTGAAGATCAAGATTGGAAAGTCTATAGATCCCACCCTAAAGAGGATTGTGACACTTATGGCCTCTGTGGACCCAATGGGTATTGTGTAAGTACTCAATCACAAGCCTGCCAATGTTTAAAAGGTTTCGGTCCAAAGTCACCAAAAAAATGGAACTCTGCTGATTGGAGTCAAGGATGTGTGCGCAATAAACCATTAAGGTGCAAAGACAAACTCACAGAGGGGTTTGTGAAATTTAAAGGCCTCAAAGTTCCAGATACTACACATACTTGGTTGGATGAGAGTATTGGTCTAGAGGAATGTAGAGTCAAGTGCTTGAATGATTGTTCTTGCATGGCCTTTACTAATTCAGATATTAGAGGTAGAGGTAATGGTTGTGTCATGTGGTTTGGAGATCTCATTGACTTGAAACAGTTTGAAACTGGTGGCCAAGATCTATATATCAGGATGGATGCTTCTGAGTTAGAGAAAGAAAAAAGTGAAAAGGATGACATTGATTTACCAACATTTGATTTTCCATTCATATCCAATGCCACAAATCGCTTTTCACAAAACAATAAATTGGGACAAGGTGGCTTTGGAACAGGTATACTACCAGATGGGCAAGAAGTTGCAGTTAAGAGGCTTTGTAAAACTTCTAGACAAGGTTTGGACGAGTTCAAAACTGAAGTTATGTTGATTGCAAAACTTCAACATCGTAATCTCATAAAGCTTCTTGGTTGTGCTATTCAACAAGATGAGAAGTTGTTGATTTATGAATTCATGCCCAATAAAAGTTTGGACTACTTTATTTTCGATCCAACAAAGCGTGCATTATTAGGTTGGACTAAGAGATTTGAAATTATTGGCGGAATTGCTCGAGGACTTCTTTATCTTCATCAAGATTCAAGACTGAAGATCATTCATAGAGATCTTAAAGCCAGCAATATTCTTCTTGATAGTGATATGAACTCAAAAATATCAGATTTTGGTATGGCCAGGATATTTGCGTTAGATCAAGATGAAGCAGATACAAATAGAGTAATGGGTACATATGGTTACATACCTCCTGAATATGCTGTACATGGATCTTTCTCCATTAAATCTGATGTTTTTAGCTTTGGTGTGATTATTTTGGAGATAATTAGTGGGAGAAAAAACAGGGGGTTTTGTGACCCAGATCGTAGCCTAAATCTTCTAGGGCATGCATGGAGACTATGGATTGAAAGTAGACCAATGGAACTTGTGGATGAATTAGTGGAAGATTCAACTACTCAATATGAAATAATAAGAAATATTCATATTGGTTTGTTATGCGTACAACAGAGACCACAAGATAGACCAAACATGTCATCAATACTTCTAATGTTGAATGGTGAAAAGTTATTACCCGAGCCAAGCCAACCTGGCTTCTACACAGGAAAAGATAATTCAACCATGATAGATACTTCTCTCAGAAATACTGATTCATATTCCCTCAATGAAATGTCTAACTCATTGTTGGAGGCAAGATAA 2313 0.3852 MEILSFMIMVAWSLVPCIIANDSINVSQFMSDGKTLVSKGGKFELGFFSPGSSQKRYLGIWYKNIPMQTVVWVANRENPINDSSGILTVNSTGNLVLTQNGSLVWYTNSHKQAQNPVVELLDSGNLVIGNEGDTDTEGYLWQSFDYPSDTLLPGMKLGSDLRTGLQRKYIAWKSTDDPSPGDVYRVLKLYNYPEFYLMNGTKKLFRYGPWNGQCFSGMTDLLNNTYIFGLNFGLNFVSNKDEIYTTFSLVSDYVITRTVTNQSGSISRYVWAVGEDQDWKVYRSHPKEDCDTYGLCGPNGYCVSTQSQACQCLKGFGPKSPKKWNSADWSQGCVRNKPLRCKDKLTEGFVKFKGLKVPDTTHTWLDESIGLEECRVKCLNDCSCMAFTNSDIRGRGNGCVMWFGDLIDLKQFETGGQDLYIRMDASELEKEKSEKDDIDLPTFDFPFISNATNRFSQNNKLGQGGFGTGILPDGQEVAVKRLCKTSRQGLDEFKTEVMLIAKLQHRNLIKLLGCAIQQDEKLLIYEFMPNKSLDYFIFDPTKRALLGWTKRFEIIGGIARGLLYLHQDSRLKIIHRDLKASNILLDSDMNSKISDFGMARIFALDQDEADTNRVMGTYGYIPPEYAVHGSFSIKSDVFSFGVIILEIISGRKNRGFCDPDRSLNLLGHAWRLWIESRPMELVDELVEDSTTQYEIIRNIHIGLLCVQQRPQDRPNMSSILLMLNGEKLLPEPSQPGFYTGKDNSTMIDTSLRNTDSYSLNEMSNSLLEAR 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01299 770 SMART blect_4 27 147 IPR001480 -
Cca04g01299 770 Pfam D-mannose binding lectin 69 173 IPR001480 -
Cca04g01299 770 ProSiteProfiles Bulb-type lectin domain profile. 21 141 IPR001480 -
Cca04g01299 770 SMART serkin_6 455 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01299 770 Pfam Protein tyrosine and serine/threonine kinase 458 720 IPR001245 GO:0004672|GO:0006468
Cca04g01299 770 PANTHER - 431 765 - -
Cca04g01299 770 PANTHER - 19 428 - -
Cca04g01299 770 SUPERFAMILY Protein kinase-like (PK-like) 439 738 IPR011009 -
Cca04g01299 770 ProSiteProfiles PAN/Apple domain profile. 341 425 IPR003609 -
Cca04g01299 770 Gene3D Phosphorylase Kinase; domain 1 428 527 - -
Cca04g01299 770 Pfam S-locus glycoprotein domain 205 320 IPR000858 GO:0048544
Cca04g01299 770 PIRSF SRK 1 438 IPR024171 GO:0004674
Cca04g01299 770 PIRSF SRK 425 770 IPR024171 GO:0004674
Cca04g01299 770 Gene3D Transferase(Phosphotransferase) domain 1 528 730 - -
Cca04g01299 770 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 431 765 - -
Cca04g01299 770 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 19 428 - -
Cca04g01299 770 ProSitePatterns Serine/Threonine protein kinases active-site signature. 573 585 IPR008271 GO:0004672|GO:0006468
Cca04g01299 770 Gene3D - 17 144 IPR036426 -
Cca04g01299 770 CDD B_lectin 27 147 IPR001480 -
Cca04g01299 770 ProSiteProfiles Protein kinase domain profile. 455 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01299 770 CDD PAN_AP_plant 338 422 - -
Cca04g01299 770 Pfam PAN-like domain 343 409 IPR003609 -
Cca04g01299 770 SMART ntp_6 344 423 IPR003609 -
Cca04g01299 770 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 178 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01299 Cca-Chr4 16240353 16252168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01299 425 738 Receptor kinase-like Gene Family AT4G23140 57.099 3.82e-126 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01299 PK_Tyr_Ser-Thr 6.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01299 - - gmx:100801916 1170.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01299 04 16240353 16252168 Cca04g01299 04 16240353 16252168 ECH