Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01290 ATGACCACCAGGGTAGCAGCGGCGGCGCCCCGCGTTTTGCGGCGGTTTTTCTGCACTAACTCCGCCTCTTCCTCTTCTCCCTCTTTCCCCTTCATTcctccgccgccttcgggcgccggccccgcccccgcccgccccacgGCGGAGCCCAACACAAAtctcttcgtctctgGACTTAGCAAACGGACTACTACAGATAGGCTTCGGGAAGAATTTGCGAAGTTTGGTGAAGTTGTTCACGCGAGGGTGGTAACTGATAGAGTCTCGGGTTACTCTAAGGGGTTTGGTTTTGTGCAATATGCCACAATAGAAGACGCCGCGAAGGGCATTGAAGGCATGGATGGCAAGTTTTTGGATGGTTGGGTTATATTTGCGGAGTATGCGAGACCAAGACCCCCACCGGGAAATGTAAATAATGCTCCACAGTATGGCCGGCAGTGA 441 0.4467 MTTRVAAAAPRVLRRFFCTNSASSSSPSFPFIPPPPSGAGPAPARPTAEPNTNLFVSGLSKRTTTDRLREEFAKFGEVVHARVVTDRVSGYSKGFGFVQYATIEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGNVNNAPQYGRQ 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01290 146 MobiDBLite consensus disorder prediction 28 43 - -
Cca04g01290 146 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 130 IPR000504 GO:0003723
Cca04g01290 146 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 4 142 - -
Cca04g01290 146 MobiDBLite consensus disorder prediction 22 54 - -
Cca04g01290 146 Gene3D - 22 138 IPR012677 -
Cca04g01290 146 PANTHER TRANSFORMER-2-RELATED 4 142 - -
Cca04g01290 146 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 120 IPR000504 GO:0003723
Cca04g01290 146 SMART rrm1_1 53 126 IPR000504 GO:0003723
Cca04g01290 146 SUPERFAMILY RNA-binding domain, RBD 34 139 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01290 Cca-Chr4 16086562 16089717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01290 51 132 Eukaryotic Initiation Factors Gene Family AT4G34110 34.146 1.53e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01290 - - ccaj:109789173 254.218