Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01285 ATGGTTTATCTGCTATTATTGAAAGTGTTGGGATCCAAGAACAGCACACCCCCGGGGAAATTCACTCAGGATGCAAGTTATGACCATGAAACAAGACATGCGTTGCTGGAATTAGAAACTGCTTTGATGGCACCTGATGGTGAAGATCAATTCACCACACCAAGCGCTTCTTTTGGTGTTACCAGCAGGCCGACAACCTCTGGCCAAAGAAATAGGTCCTGGAGCCATGAGGGCCAGTCAAGTGATGATGCACATATAGAGAAGCGTCACAAATCAATGGAGGAAGTATCTCTACAAGGACTCCCATCAATCAATTTGAAACAATTGCTGATTGTTTGTGCCAAAGCCTTGTCGGAAAACAACATGAAAGATTTTGATCATTTGATAGAAAAGGCTAGAAGTGTTGTGTCTATAAGTGGGGAACCAATCCAGCGCCTTGGTGCTTATTTGGTAGAAGGGCTAGTTGCAAGGAAGGAGGCATCAGGAAATAACATCTACCATGCCCTTAGGTGCAGAGAGCCTGAGGGAAAAGACTTACTCTCTTACATGCAGATACTGTATGAAATCTGTCCCTACTTAAAATTTGGTTACATGGCTGCCAATGGAGCTATTGCTGAAGCTTGTAGGAATGAGGACCGCATTCACATCATAGACTTTCAGATTGGTCAGGGAATTCAATGGATGACACTTCTTCAAGCTCTTGCAGCAAGACCTGGTGGACCTCCTCATATGCGGATCACAGGGATTGATGATCCTTTCTCTAAATATGTTCGTGGTGATGGATTGGAAGCTGTTGAGAAAAGCTTAGCTGCAATCTCTCAGAGATTTAACATCCCAGTTGAGTTCCATGGTGTGCCTGTATTAGCTCCAGATGTGACAAAGGACATGCTTGATGTTAGGCCTGGTGAGGCTTTGGCTGTGAACTTCCCTTTGCAACTCCATCACACGGCTGATGAGAGTGTTGATATGAGTAATCCAAGGGATGGACTTCTGAGATTGGTGAAATCACTGTCTCCCAAGGTAACTACATTGGTAGAGCAAGAGTCAAACACAAATACCACTCCTTTCTTCATCAGGTTTATAGAAACCTTGGATTACTACTTGGCAATATTTGAGTCCATTGATGTGTCTCTTCCTAGAAAGAGCAAGGAGAGGATTAATGTGGAGCAACATTGTCTGGCTCGGGATATTGTCAACATTATTGCTTGTGAAGGGAAGGAAAGGGTAGAGAGACATGAGCTGTTAGGAAAGTGGAAGTCTAGGTTGACAATGGCTGGTTTTTGTCAATATCCTTTGAGTTCTTATGTGAATTCTGTCATAAGAAGCCTGCTGAAGTGCTATTCAGAACATTATGATCTTGTAGAGAAGGATGGGGCCATGTTGTTGGGATGGAAGGAGAGAAAATTGATTTCAGCTTCAGCTTGGCATTGA 1431 0.4347 MVYLLLLKVLGSKNSTPPGKFTQDASYDHETRHALLELETALMAPDGEDQFTTPSASFGVTSRPTTSGQRNRSWSHEGQSSDDAHIEKRHKSMEEVSLQGLPSINLKQLLIVCAKALSENNMKDFDHLIEKARSVVSISGEPIQRLGAYLVEGLVARKEASGNNIYHALRCREPEGKDLLSYMQILYEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIGQGIQWMTLLQALAARPGGPPHMRITGIDDPFSKYVRGDGLEAVEKSLAAISQRFNIPVEFHGVPVLAPDVTKDMLDVRPGEALAVNFPLQLHHTADESVDMSNPRDGLLRLVKSLSPKVTTLVEQESNTNTTPFFIRFIETLDYYLAIFESIDVSLPRKSKERINVEQHCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFCQYPLSSYVNSVIRSLLKCYSEHYDLVEKDGAMLLGWKERKLISASAWH 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01285 476 ProSiteProfiles GRAS family profile. 97 476 IPR005202 -
Cca04g01285 476 PANTHER CHITIN-INDUCIBLE GIBBERELLIN-RESPONSIVE PROTEIN 1 24 476 - -
Cca04g01285 476 Pfam GRAS domain family 106 475 IPR005202 -
Cca04g01285 476 MobiDBLite consensus disorder prediction 50 75 - -
Cca04g01285 476 MobiDBLite consensus disorder prediction 47 83 - -
Cca04g01285 476 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 24 476 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01285 Cca-Chr4 15944874 15948180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01285 16 475 GRAS Transcription Factor Family AT5G48150 55.297 1.44e-180 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca04g01285 GRAS 6.6e-126 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01285 - - gmx:100775665 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01285 04 15944874 15948180 Cca04g01285 04 15944874 15948180 ECH