Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01282 ATGTCTAATGTATCATCATCTCTACCAGTTTTCTCTCATGATGCAAAACCACCCTCAAACTTTCGACCAATTGCAGATTTTCATCCTTCTGTTTGGGGGGATTATTTTATTCAGTATCTTTCTAGTTCCGAGGAGCTTGACCATAATATTGAGACACAAATTGAAACATTAAAAAAGGAAGTGAGCAAGATGCTTGTCTCAAAGACTGAGAATCCCTTAACAAAAGTTGACTTGATTGATTCAATCTCTCGTTTGGGTGTGAACTATCACTTTGAGCATGAGATTGATGAAGTTATGCAACAAATTTACAAGAATTATGTTGTAAACGGAGAAATAAATATTGAAGCCAACCTCTCCACTGTTGCTGTGTTATTTAGATTATTGAGGCAACACGGATTTCATGTTTCACCTATTGTGTTCAACAAGTTCAAGAATCTACAAGGAAACTTTAATGAGAGACTTTTGAGTGATGTTGAGGGAATGTTAAGCTTGTATGAAGCCTCACATATGATGGTTCATGGAGAGGACATTTTGGAAGAAGCACTAACTTTCACTTCCACTCACCTTAAGTCCATTACCACCACATTGAGTCCTTCTCTTGCAGCTCAAGTCAATCATAGCTTAAGGCAAGCTCTCCATAAAAACCTGCCTAGGCTAGAGGCACGACGCTACATTTCTATCTATGAGCAAGATCCTTCTCATAATGAAATTCTACTTACTTTGGCAAAATTAGATTTCAATAAATTGCAAAATCTACATAAAAAAGAATTTGGCAACATTTGCAAGTGGTGGAAAGAGTTGGACGTCTCTGGTAAATTACCCTATGTGCGAGATAGAATTGTGGAATGTTGCTTTTGGGTTTTAGGGGTATATTTTGAGCCCCAATATTCTCAAGCAAGAAAAATACTTTCGAAAGTATTTGGCATAACATTAATCATTGATGATACATATGATGCATATGGGACCATTGACGAATTAGAACTTTTGACTGAAGCAATTGAAAGGTGGGATATTAGTTGCTTGAATGATCTCCCGGAATCCATGAAATTACCTTATAAGTTACTCATAAATCTTTATGAAGAAATAGAACAAGAAATGATTAAGGAAGGAAAATCTTATTGCATCAACTACGGCATAGAAGAATACAAAAAGTCGGTTCGAGCTTACATGACTGAGGCCAAATGGTTCAACAACAACTATAAACCAACAATAGAGGAGTACTTGCATGTATCAGCAATATCATGTGGTTACTCATTGATGACAATAACAAGTTACATTGGAATGGGAGACATGGTCACTGAGGACATCTTTAAATGGGCAACAAATGAGCCAAAATTTCTTAGGGCTATTTCGATTGGTGGGAGGCTAATGGATGACATTGCGTCCAACGAGTTTGAACAAAAAAGAGGACATGTTTCCTCATTCTTGGAATGCTATATGAATCAATATGATGAGTCTAGGGAAGCTGCCATTCACGAATGTCAAAATAGAATAATTGATAATTGGAAGGATATAAACGAGGAGTGTCTTATGCCGACCAAAGTTCCAATGCCTTTTCTGAGACGTCCTTTCAACCTTGCATGTTTCATGGATGTGTTCTATAAAGATGAAGATAACTTCACGCACTCTGGAGGAATAATGAAGACATCTATTAAAGCTTTGCTCTTAGATCCACCAGAGCATAAATATACTGTTTGCAAATCTTTAAATTTTAACAAGGATTTGCAGAAGGCAACACATAATTTTACCACAGTCATAGGACAAGGTGCATTTGGTCCAGTTTATAAAGCTCAGATGCTTACTGGTGAGACAGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCACACAGAGGTTATGTTGTTGGGAAGGTTACACCATAGAAATCTGGTGAATTTGGTTGGATACTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTATACATGAGTAGGGGTAGCTTGGCATCCCATTTGTATAGTGAAGTGAATGAAGCACTGTGCTGGGATTTGAGGGTTCACATAGCTCTAGATGTAGCAAGAGGCTTGGAGTATCTTCATGATGGGGCCGTTCCTCCTGTAATCCATCGAGACATCAAATCTTCCAATATTCTGTTGGACCAATCCATGCGAGCCAGAGTTGCTGATTTTGGACTTTCAAGAGAAGAGAAGGTGGATAAACATGCAGCTATTCGGGGTACCTTTGGCTATCTTGATCCCGAGTATATATCTTCAGGAACATTCACTAAGAAAAGTGATGTATACAGTTTTGGGGTGTTGCTCTTTGAAATTATAGCTGGCAGAAACCCTCAGCAGGGTCTTATGGAATATGTAGAGCTTGCATCAATGAACATCGAGGGAAAAGTTGGGTGGGAAGAAATTGTGGATTCTCACCTTCAAGGAAACTTTGATGTCAAAGAACTGAATGAAGTGGCATCACTTGCCTACAAATGCATCAACCGGGCCCCAAGGAAACGTCCTTCCATGAGGGACATAGTGCAAGTGCTAACAAGAATCCTCAAATCAAGGCACCATGGGAATCATCACAGAAATTCCTTGTCAGCCACAGATGAAGTTTTCATTGATCATGATCAGCTAGAGACCAAGATTTCTGTTTCTGACCACAAGAGAGAAGAATCTATGGTTAGTGAACCAGAAGTGTATGATGTGTAG 2691 0.3865 MSNVSSSLPVFSHDAKPPSNFRPIADFHPSVWGDYFIQYLSSSEELDHNIETQIETLKKEVSKMLVSKTENPLTKVDLIDSISRLGVNYHFEHEIDEVMQQIYKNYVVNGEINIEANLSTVAVLFRLLRQHGFHVSPIVFNKFKNLQGNFNERLLSDVEGMLSLYEASHMMVHGEDILEEALTFTSTHLKSITTTLSPSLAAQVNHSLRQALHKNLPRLEARRYISIYEQDPSHNEILLTLAKLDFNKLQNLHKKEFGNICKWWKELDVSGKLPYVRDRIVECCFWVLGVYFEPQYSQARKILSKVFGITLIIDDTYDAYGTIDELELLTEAIERWDISCLNDLPESMKLPYKLLINLYEEIEQEMIKEGKSYCINYGIEEYKKSVRAYMTEAKWFNNNYKPTIEEYLHVSAISCGYSLMTITSYIGMGDMVTEDIFKWATNEPKFLRAISIGGRLMDDIASNEFEQKRGHVSSFLECYMNQYDESREAAIHECQNRIIDNWKDINEECLMPTKVPMPFLRRPFNLACFMDVFYKDEDNFTHSGGIMKTSIKALLLDPPEHKYTVCKSLNFNKDLQKATHNFTTVIGQGAFGPVYKAQMLTGETVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSRGSLASHLYSEVNEALCWDLRVHIALDVARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEKVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFEIIAGRNPQQGLMEYVELASMNIEGKVGWEEIVDSHLQGNFDVKELNEVASLAYKCINRAPRKRPSMRDIVQVLTRILKSRHHGNHHRNSLSATDEVFIDHDQLETKISVSDHKREESMVSEPEVYDV 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01282 896 Gene3D Farnesyl Diphosphate Synthase 29 548 IPR008949 -
Cca04g01282 896 ProSitePatterns Serine/Threonine protein kinases active-site signature. 700 712 IPR008271 GO:0004672|GO:0006468
Cca04g01282 896 SFLD Isoprenoid Synthase Type I 234 558 - -
Cca04g01282 896 ProSiteProfiles Protein kinase domain profile. 580 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01282 896 CDD STKc_IRAK 586 845 - -
Cca04g01282 896 Gene3D Transferase(Phosphotransferase) domain 1 656 868 - -
Cca04g01282 896 SFLD Terpene Cyclase Like 1 C Terminal Domain 234 558 IPR034741 -
Cca04g01282 896 Pfam Terpene synthase, N-terminal domain 32 208 IPR001906 GO:0010333|GO:0016829
Cca04g01282 896 PANTHER OS04G0344100 PROTEIN-RELATED 5 541 - -
Cca04g01282 896 Pfam Protein tyrosine and serine/threonine kinase 582 842 IPR001245 GO:0004672|GO:0006468
Cca04g01282 896 SUPERFAMILY Terpenoid synthases 234 558 IPR008949 -
Cca04g01282 896 SMART serkin_6 580 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01282 896 PANTHER TERPENE SYNTHASE 2-RELATED 5 541 - -
Cca04g01282 896 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 28 234 IPR008930 -
Cca04g01282 896 Gene3D - 70 234 IPR036965 GO:0010333|GO:0016829
Cca04g01282 896 CDD Terpene_cyclase_plant_C1 22 558 IPR044814 GO:0010333|GO:0016102
Cca04g01282 896 Pfam Terpene synthase family, metal binding domain 239 504 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cca04g01282 896 SUPERFAMILY Protein kinase-like (PK-like) 563 842 IPR011009 -
Cca04g01282 896 Gene3D Phosphorylase Kinase; domain 1 558 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01282 Cca-Chr4 15778740 15792007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01282 573 888 Glycoside Hydrolase AT3G07070 41.246 3.69e-67 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Cca04g01282 Terpene_synth_C 1.4e-102 CL0613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01282 - - aprc:113865171 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01282 04 15778740 15792007 Cca04g01282 04 15778740 15792007 ECH
Cca10g00999 10 11757577 11762108 Cca04g01282 04 15778740 15792007 PCT